| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,119,166 – 11,119,261 |
| Length | 95 |
| Max. P | 0.777515 |
| Location | 11,119,166 – 11,119,261 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 82.73 |
| Mean single sequence MFE | -31.77 |
| Consensus MFE | -15.34 |
| Energy contribution | -16.28 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.17 |
| Mean z-score | -3.48 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11119166 95 + 27905053 CCCUCCCCUCGCCCGUUCUUGGCCCGUUAAUAAAGCGUUUAAUCUUCAAUACGUUUUGUUAAUGAGCUCGAAAAAGAGACAGGGAGAGGGUGAGA-- ..((((((((.(((.((((((((.((((((((((((((............)))))))))))))).))).....)))))...))).))))).))).-- ( -40.10) >DroSec_CAF1 29581 95 + 1 CCCUCCCCUCGCCCGCUUUUCGCCCGUUAAUAAAGCGUUUAAUCUUCAAUACGUUUUGUUAAUGAGCUCGAAAAAGAGACAGGGAGAGGGUGAGA-- ..((((((((.(((.((((((((.((((((((((((((............)))))))))))))).))..)))...)))...))).))))).))).-- ( -37.40) >DroSim_CAF1 28729 95 + 1 CCCUCCCCUCGCCCGAUUUUCGCCCGUUAAUAAAGCGUUUAAUCUUCAAUACGUUUUGUUAAUGAGCUCGAAAAAGAGACAGGGAGAGGGUGAGA-- ..((((((((.(((..........((((((((((((((............)))))))))))))).((((......))).).))).))))).))).-- ( -36.60) >DroEre_CAF1 30033 89 + 1 CCCUCCCCUCGUCCGUU-UUGGCCCGUUAAUAAAGCGUUUAAUCUUCAAUACGUUUUGUUAAUGAGCUCGAAAAAGAGACAGACACAGCA------- ..........(((.(((-(((((.((((((((((((((............)))))))))))))).))).......))))).)))......------- ( -23.11) >DroYak_CAF1 30481 96 + 1 CCCUCUCCUCGCCCGCU-UUGGCCCGUUAAUAAAGCGUUUAAUCUUCAAUACGUUUUGUUAAUGAGCUCGAAAAAGAGACAGAGUCAGCGUGAGGGA (((((....(((..(((-(((...((((((((((((((............))))))))))))))..(((......))).))))))..))).))))). ( -35.90) >DroPer_CAF1 35619 92 + 1 UCUACUUCUCU----UUUUGUUGCUGUUAAUAAAGCGCUUAAUCUUCAAUACAUUUUGUUAAUGAGUUCAAAAA-UAGAGGGGGAUAGCGAGACGGC ((..(((((.(----(((((..(((((((((((((.(..............).)))))))))).))).))))))-.)))))..))............ ( -17.54) >consensus CCCUCCCCUCGCCCGUUUUUGGCCCGUUAAUAAAGCGUUUAAUCUUCAAUACGUUUUGUUAAUGAGCUCGAAAAAGAGACAGGGAGAGCGUGAGA__ .......(((((.(..........((((((((((((((............))))))))))))))..(((......))).........).)))))... (-15.34 = -16.28 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:34 2006