Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,109,250 – 11,109,341 |
Length | 91 |
Max. P | 0.807763 |
Location | 11,109,250 – 11,109,341 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 69.14 |
Mean single sequence MFE | -29.26 |
Consensus MFE | -7.96 |
Energy contribution | -9.68 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.11 |
Mean z-score | -1.97 |
Structure conservation index | 0.27 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807763 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11109250 91 + 27905053 GUCUGGAGCUGCUCGAGAAAAGGGGCAAUAGCCCAGUGCAGCUGAG----UGAUUCAUCUUGGGUUUUUAAUUCGAGGAUGGUAGCUACAGC---AUC ((((((.(((((((........))))...))))))).)).((((((----(...(((((((.((........)).)))))))..))).))))---... ( -32.30) >DroSec_CAF1 19774 70 + 1 ---------------------GGGGCAAUAGCCCAGUGCAGCCGAG----UGAUUCAUCUUGGGUUUUAAAUUCGAGGAUGGUAGCUUCAGC---AUC ---------------------.((((....)))).((((....(((----(...(((((((.((........)).)))))))..))))..))---)). ( -22.50) >DroSim_CAF1 18361 91 + 1 GUCUGGAGCGGCUCGAGAAAAGGGGCAAUAGCCCAGUGCAGCCGAG----UGAUUCAUCUUGGGUUUUUAAUUCGAGGAUGGUAGCUUCAGC---AUC (.(((((((.(((((.(..(..((((....))))..)....)))))----)...(((((((.((........)).)))))))..))))))))---... ( -33.30) >DroEre_CAF1 20053 85 + 1 GUCUGGAU--UCUGGAGU--------CUCGCUCCACUGCAGCUCAGUGGGUGACUCAUCUUGGGUUUUGUAUUCGAGGAUGGUUGCUUCAGC---AUC .....(((--.(((((((--------.((((.((((((.....)))))))))).(((((((.((........)).)))))))..))))))).---))) ( -29.80) >DroYak_CAF1 20435 88 + 1 GUCAGAAA--GCAGAAGU--------CUGGAGCCACUGCAGCCGAGUGGGUGACUCAGCUUGGGUUUUCAAUGCGAGGAUGCUAGCUUUAGCUUCAUC ........--...((((.--------(((((((....((..((((((((....))..))))))((((((.....))))))))..)))))))))))... ( -28.40) >consensus GUCUGGAG__GCUCGAGA___GGGGCAAUAGCCCAGUGCAGCCGAG____UGAUUCAUCUUGGGUUUUUAAUUCGAGGAUGGUAGCUUCAGC___AUC ......................((((....))))...((.((((((.......)))..(((((((.....)))))))...))).))............ ( -7.96 = -9.68 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:28 2006