Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,108,404 – 11,108,496 |
Length | 92 |
Max. P | 0.520385 |
Location | 11,108,404 – 11,108,496 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 79.96 |
Mean single sequence MFE | -17.88 |
Consensus MFE | -11.65 |
Energy contribution | -11.84 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.15 |
Mean z-score | -1.62 |
Structure conservation index | 0.65 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11108404 92 + 27905053 AUGAUUAAAUUCCGAAUUUUCCAUGCGAUAAUUUGUAAA-UUUUGUGUGGAAAGGUAGAUCUUAUAAGGUCGGAUACAGAUGGAAAAUAUCUG ..........(((...((((((((((((.((((....))-))))))))))))))...(((((....))))))))..((((((.....)))))) ( -23.70) >DroSim_CAF1 17541 78 + 1 AUGAUGAAAUUCCGAAUUUUCCAUGCGAUCAUUUGGAAA-UAUUGUGUGGAAAGGUAGAUGUUAUAAG--------------GAAAAUAUCUG ................(((((((((((((.(((....))-)))))))))))))).((((((((.....--------------...)))))))) ( -16.90) >DroEre_CAF1 19200 83 + 1 AUGAUGAAAUUCUGAAUUUUCCAUGCGAUAAUUUGGAAAAUUUUCCGUGGAAAGCUAGAUGUUAAAAGGCC----------ACAAAAUAUCUG ..((((.......((((((((((..........))))))))))...((((..(((.....)))......))----------))....)))).. ( -15.10) >DroYak_CAF1 19611 81 + 1 AUGAUGAAAUUCGGAAUUUUCCAUGCGAUAAUUUGGGAA-CUUUGUGUGGAGAGCUAGGUGCUAGAAG-UU----------GGAAAAUAUCUG ..((((...(((.((.((((((((((((...........-..))))))))))))((((...))))...-))----------.)))..)))).. ( -15.82) >consensus AUGAUGAAAUUCCGAAUUUUCCAUGCGAUAAUUUGGAAA_UUUUGUGUGGAAAGCUAGAUGUUAUAAG_UC__________GGAAAAUAUCUG ................((((((((((((..............)))))))))))).((((((((......................)))))))) (-11.65 = -11.84 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:27 2006