| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,103,198 – 11,103,303 |
| Length | 105 |
| Max. P | 0.745679 |
| Location | 11,103,198 – 11,103,303 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 83.24 |
| Mean single sequence MFE | -37.21 |
| Consensus MFE | -24.77 |
| Energy contribution | -24.85 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11103198 105 + 27905053 GAGGUGUUGCUAUCCUUAGACGGCGUCGAGGCACGAGAUUCGUUCCGCAUCUGUUCCAUUUUCUUGGCCUUGGCGCUGCCUGGU----AUGUAAACA--CCUUAAUUUACA ((((((((((...((..((.((((((((((((.(((((........((....)).......))))))))))))))))).)))).----..)).))))--))))........ ( -41.16) >DroVir_CAF1 16221 109 + 1 GAUGUGUUGCCAUCUUUGGAGGGCGUCGACGCACGAGAUUCAUUGCCAACUUGCUCCAUUUUCUUGGCUUUUGCACUGCCUGGCAUGUAGGGAAACACACUCCAUUGU-G- ((((((((((((....(((((.(((....))).((((............)))))))))......))))(((((((.(((...)))))))))).)))))).))......-.- ( -27.80) >DroSec_CAF1 13805 105 + 1 GAGGUGUUGCUAUCCUUAGACGGCGUCGAGGCACGAGAUUCGUUGCGCAUCUGUUCCAUUUUCUUAGCCUUGGCGCUGCCUAUU----UAGUAAACA--AUGUAAUGUACA ...((.((((((....(((.((((((((((((..((((...(..(((....)))..)....)))).)))))))))))).)))..----)))))))).--............ ( -32.20) >DroSim_CAF1 12403 105 + 1 GAGGUGUUGCUAUCCUUAGACGGCGUCGAGGCACGAGAUUCGUUACGCAUCUGUUCCAUUUUCUUGGCCUUGGCGCUGCCUAUU----UAGUAAACA--GCUUAAUGUACA (((.((((((((....(((.((((((((((((.(((((...(..(((....)))..)....))))))))))))))))).)))..----)))).))))--.)))........ ( -39.90) >DroEre_CAF1 13691 105 + 1 GAAGUGUUGCUAUCCUUAGAGGGCGUCGAGGCACGAGAUUCGUUACGCAUCUGUUCCAUUUUCUUGGCUUUGGCGCUGCCUAUU----AAGGAAGCA--GCUUCAUGUAUU (((((..((((.((((((((((((((((((((.(((((...(..(((....)))..)....)))))))))))))))..))).))----)))))))))--)))))....... ( -42.00) >DroYak_CAF1 14044 105 + 1 GAGGUGUUGCUAUCCUUAGAGGGCGUCGAGGCACGAGAUUCGUUGCGCAUCUGCUCCAUUUUCUUGGCCUUGGCGCUGCCUAUU----UAGCAAACA--GCUGAAUGUAUU .((.((((((((....(((..(((((((((((.(((((...((.(.((....)).).))..))))))))))))))))..)))..----)))).))))--.))......... ( -40.20) >consensus GAGGUGUUGCUAUCCUUAGACGGCGUCGAGGCACGAGAUUCGUUGCGCAUCUGUUCCAUUUUCUUGGCCUUGGCGCUGCCUAUU____AAGUAAACA__GCUUAAUGUACA ...((.(((((.....(((..(((((((((((.(((((......((......)).......))))))))))))))))..))).......)))))))............... (-24.77 = -24.85 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:26 2006