Locus 4072

Sequence ID 3R_DroMel_CAF1
Location 11,102,350 – 11,102,470
Length 120
Max. P 0.511751
window6523

overview

Window 3

Location 11,102,350 – 11,102,470
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.72
Mean single sequence MFE -34.69
Consensus MFE -19.46
Energy contribution -19.83
Covariance contribution 0.37
Combinations/Pair 1.48
Mean z-score -1.58
Structure conservation index 0.56
SVM decision value -0.04
SVM RNA-class probability 0.511751
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11102350 120 - 27905053
UUGGCUCAAUGCUCAGCUACUCUGCGUUGGAUCAGCAGUCCAUGCAGAACCUACUCACGCACGUGCAGGAUUUCCUUAAAUUCCUCGUAAAGAACAGCUCAAUAUUUUUCAGCAUGAGCA
...(((((.((((.((((..(((((((.((((.....)))))))))))...............(((((((...........)))).)))......))))...........))))))))). ( -30.80)
>DroPse_CAF1 15278 120 - 1
UGGGCUCUAUGCUGACAUACUCGGCGCUGGAUCAGCAGGCCAUGCAGAACUUAAUCGUGCACCUGCAGGAUUUUCUCAAGUUUCUGGUGAAGAAUAGCGCUGUAUAUUUCAGCAUGAAUA
.......((((((((.(((..((((((((..(((.((((.(.((.((((...((((.(((....))).)))))))))).)..)))).)))....))))))))..))).)))))))).... ( -43.00)
>DroWil_CAF1 13652 120 - 1
UGGGAUCCAUGCUAAGUUAUUCAGCCCUAGAUCAACAGGCCAUGCAAAAUCUUCUUCAGCAUUUGCAGGACUUUCUCAAAUUUUUGGUGAAAAACAGCGCCAUUUACUUUAGUAUGAACA
.......(((((((((((..((.......))..)))(((((.((((((..((.....))..)))))))).)))...........(((((........)))))......)))))))).... ( -21.80)
>DroMoj_CAF1 14764 120 - 1
UUGGCUCGAUGCUGAGCUACUCGGCCUUGGAUCAACCGGCAAUGCAAACCCUGUUGGCGCACUUGCAUGAUUUCCUCAAGUUUCUGGUGAAGAACAGCGCCAUGUACUUUAACAUGUCAA
((((..(((.((((((...)))))).)))..))))..((((.((..........(((((((((((...(....)..)))))((((.....))))..))))))..........)))))).. ( -31.65)
>DroAna_CAF1 13237 120 - 1
UGGGCUCCAUGCUCAGCUAUUCCGCGCUGGACCAGCAGUCUAUGCAGAAUCUGCUCGUACACCUGCAGGAUUUCCUAAAGUUUCUGGUGAAGAACAGUGCCAUGUAUUUUAGCAUGAGCA
(((((.....)))))(((.....((((((.((.((((((((....)))..))))).)).((((.(((((....)))...))....)))).....))))))(((((......)))))))). ( -37.90)
>DroPer_CAF1 15266 120 - 1
UGGGCUCUAUGCUGACAUACUCGGCGCUGGAUCAGCAGGCCAUGCAGAACUUAAUCGUGCACCUGCAGGAUUUUCUCAAGUUUCUGGUGAAGAAUAGCGCUGUAUAUUUCAGCAUGAAUA
.......((((((((.(((..((((((((..(((.((((.(.((.((((...((((.(((....))).)))))))))).)..)))).)))....))))))))..))).)))))))).... ( -43.00)
>consensus
UGGGCUCCAUGCUGAGCUACUCGGCGCUGGAUCAGCAGGCCAUGCAGAACCUACUCGUGCACCUGCAGGAUUUCCUCAAGUUUCUGGUGAAGAACAGCGCCAUAUAUUUCAGCAUGAACA
.......(((((((((......(((((((..........((.(((((...............)))))))............((((.....)))))))))))......))))))))).... (-19.46 = -19.83 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:25 2006