Locus 4070

Sequence ID 3R_DroMel_CAF1
Location 11,086,576 – 11,086,678
Length 102
Max. P 0.555807
window6521

overview

Window 1

Location 11,086,576 – 11,086,678
Length 102
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 81.15
Mean single sequence MFE -24.86
Consensus MFE -16.36
Energy contribution -16.50
Covariance contribution 0.14
Combinations/Pair 1.33
Mean z-score -1.45
Structure conservation index 0.66
SVM decision value 0.04
SVM RNA-class probability 0.555807
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11086576 102 + 27905053
ACAACACUUCGUAGAGGCAGUACACUCCUCUGUG------UCUUCAGUGCACUUACAGCCCACAAUCCCCGCUUCCGGCUUGGGCACAUCCUUGCCGAUUAUGUUAUC
..((((.......(((((((.((((......)))------)))...(((..(.....)..))).......)))))((((..(((....)))..))))....))))... ( -23.50)
>DroSec_CAF1 16504 102 + 1
ACAACACUUCGUAGAGGCAGUACACUCCCCUGUG------UCUUCAGUGCACUUACAGCCCACAAUUCCCACUUCCGGCUUGGGCACAUCCUUGCCGAUUAUGUUAUC
..((((..(((..((((.((.((((......)))------)))...((((.((...((((................)))).))))))..))))..)))...))))... ( -23.39)
>DroSim_CAF1 16712 102 + 1
ACAACACUUCGUAGAGGCAGCACACUCCUCUGUG------UCUUCAGUGCACUUACAGCCCAGAAUUCCCACUUCCGGCUUGGGCACAUCCUUGCCGAUUAUGUUAUC
..((((..(((..((((.((.((((......)))------)))...((((.((...((((..(((.......))).)))).))))))..))))..)))...))))... ( -25.00)
>DroEre_CAF1 17915 108 + 1
ACAACACUUCGUAGAGGCAGUGCACUCCUCCACGCCAUUCUCUUCAAUGCACUUACAGCCUAGAAGCCCCGCUUCCGGCUUGGGCACACCCUUGCCAAUUAUGUUUUC
.........(((((((((((((((.......................))))))....)))).(((((...))))).(((..(((....)))..)))..)))))..... ( -26.20)
>DroYak_CAF1 16398 108 + 1
ACAACACUUCGUAGAGGCAGCACACACCUCUACGCCAUUCUCGUCAAUGCACUUACAGCCUAGAAGCCCCGCUUCCGGCUUGGGCACACCUUUUCCGAUUAUGUUAUC
..((((..(((((((((.........)))))))(((......((....)).....(((((..(((((...))))).))).)))))...........))...))))... ( -26.80)
>DroAna_CAF1 16933 108 + 1
ACAGCACUUUGUGGACGCGGUACACUCUUCCACUCCGUUCUCAUCCAGGCACUUGCACCCCACCAGACCGUCCUCCGGCUGGGGCACACCCUCGCAAAUGAUGUUCUU
...((.((.((.(((((.(((..........))).))))).))...))))..((((.......(((.(((.....))))))(((....)))..))))........... ( -24.30)
>consensus
ACAACACUUCGUAGAGGCAGUACACUCCUCUACG______UCUUCAAUGCACUUACAGCCCACAAGCCCCGCUUCCGGCUUGGGCACACCCUUGCCGAUUAUGUUAUC
..((((...((((((((.((....)))))))))).........................................((((..(((....)))..))))....))))... (-16.36 = -16.50 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:23 2006