Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,517,216 – 1,517,311 |
Length | 95 |
Max. P | 0.500000 |
Location | 1,517,216 – 1,517,311 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 83.51 |
Mean single sequence MFE | -32.80 |
Consensus MFE | -22.30 |
Energy contribution | -23.55 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.50 |
Structure conservation index | 0.68 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1517216 95 - 27905053 UAGUGUGUAUCCGCCAGGAAUAUAACGCAUACGCCGCGUGAGCCACCGAAGAGCUCGAGGACAGCGGGCUGGCGACGGCGAUGGCGAUGGGGAUG .......(((((.(((.........(((...((((((((.((((........(((.......))).)))).))).)))))...))).)))))))) ( -33.90) >DroSec_CAF1 18969 89 - 1 GAGGGUGUAUCCGCCAGGAAUAUAACGCAUACGCCGCGUGAGCCACGGAAGAGCUCGAGGACAGCGGGCUGGCGAUGGCGAUGGC------GAUG ...((((....))))..........(((...((((((((.((((.(....).(((.......))).)))).))).)))))...))------)... ( -34.00) >DroSim_CAF1 17206 89 - 1 GAGGGUGUAUCCGCCAGGAAUAUAACGCAUACGCCGCGUGAGCCACGGAAGAGCUCGAGGACAGCGGGCUGGCGAUGGCGAUGGC------GAUG ...((((....))))..........(((...((((((((.((((.(....).(((.......))).)))).))).)))))...))------)... ( -34.00) >DroYak_CAF1 16580 74 - 1 AAGGGUGUAUACGCCAGGAAUAUAACGCAUACGCCGCGUAAGCCACGGAAAAGCUCGUGGACAGCGGGGUGGCG--------------------- ...((((....))))..........(((.(((.((((.....((((((......))))))...)))).))))))--------------------- ( -29.30) >consensus GAGGGUGUAUCCGCCAGGAAUAUAACGCAUACGCCGCGUGAGCCACGGAAGAGCUCGAGGACAGCGGGCUGGCGAUGGCGAUGGC______GAUG ...((((....))))..........(((...((((((....))........((((((.......))))))))))...)))............... (-22.30 = -23.55 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:25 2006