Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,080,449 – 11,080,542 |
Length | 93 |
Max. P | 0.969355 |
Location | 11,080,449 – 11,080,542 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 80.73 |
Mean single sequence MFE | -40.12 |
Consensus MFE | -25.26 |
Energy contribution | -25.90 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.17 |
Mean z-score | -1.76 |
Structure conservation index | 0.63 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11080449 93 + 27905053 GG------UCAGCGCAAGGAGCAGACUCCCUCGCUGACUCUGCCGCCGGCCAGUCCAGCCGCAGGACAGUCCGGCGAGAAGCUGACCAGCGGCAAGAUC ((------((((((...((((....))))..)))))))).((((((.((.((((....((((.((.....)).))).)..)))).)).))))))..... ( -43.60) >DroGri_CAF1 11536 96 + 1 AGCAUGCAUCAGCGUAAGGAGCAAACGCCCACAUUGACCCUGCCCCCCGCCAGUCCGUCGGC---CAGUUGCAGCGAGAAGUCGGCAGGUGGCAAAAUA ...((((....))))..((.((....))))..........((((.((.(((..(((((..((---.....)).))).))....))).)).))))..... ( -25.30) >DroSec_CAF1 10307 93 + 1 GG------UCAGCGCAAGGAGCAGACUCCCUCGCUGACCCUGCCGCCGGCAAGUCCAGCCGCAGGCCAGUCCGGCGAGAAGCUGACCAGCGGCAAGAUC ((------(((((....((((....))))((((((((((((((.((.((.....)).)).)))))...)).)))))))..)))))))............ ( -43.30) >DroSim_CAF1 10538 93 + 1 GG------UCAGCGCAAGGAGCAGACUCCCUCGCUGACCCUGCCGCCGGCAAGUCCAGCCGCAGGCCAGUCCGGCGAGAAGCUGACCAGCGGCAAGAUC ((------(((((....((((....))))((((((((((((((.((.((.....)).)).)))))...)).)))))))..)))))))............ ( -43.30) >DroEre_CAF1 11832 90 + 1 GG------CCAGCGCAAGGAGCAGACUCCCUCGCUGACCCUGCCGCCGGCCAGCCCUGCCGCAGGA---GCUGGAGAGAAGCUGGCCAGCGGCAAGAUC ((------.(((((...((((....))))..))))).)).((((((.(((((((.((.((((....---)).))..))..))))))).))))))..... ( -46.30) >DroYak_CAF1 10289 90 + 1 UG------CCAGCGCAAGGAGCAGACUCCAUCUCUGACCCUGCCGCCGGCCAGCCCUGCCGCAGCA---GCCGGAGAGAAGCUGGCCAGCGGCAAGAUC ((------(....)))(((..((((.......))))..)))(((((.(((((((.((.((((....---).)))..))..))))))).)))))...... ( -38.90) >consensus GG______UCAGCGCAAGGAGCAGACUCCCUCGCUGACCCUGCCGCCGGCCAGUCCAGCCGCAGGACAGUCCGGCGAGAAGCUGACCAGCGGCAAGAUC .........(((((...((((....))))..)))))....((((((((((.......))))..........((((.....))))....))))))..... (-25.26 = -25.90 + 0.64)
Location | 11,080,449 – 11,080,542 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 80.73 |
Mean single sequence MFE | -53.10 |
Consensus MFE | -44.82 |
Energy contribution | -46.80 |
Covariance contribution | 1.98 |
Combinations/Pair | 1.17 |
Mean z-score | -3.95 |
Structure conservation index | 0.84 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969355 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11080449 93 - 27905053 GAUCUUGCCGCUGGUCAGCUUCUCGCCGGACUGUCCUGCGGCUGGACUGGCCGGCGGCAGAGUCAGCGAGGGAGUCUGCUCCUUGCGCUGA------CC ..(((.((((((((((((((..((((.((.....)).))))..)).)))))))))))))))(((((((((((((....)))))).))))))------). ( -59.00) >DroGri_CAF1 11536 96 - 1 UAUUUUGCCACCUGCCGACUUCUCGCUGCAACUG---GCCGACGGACUGGCGGGGGGCAGGGUCAAUGUGGGCGUUUGCUCCUUACGCUGAUGCAUGCU .((((((((.(((((((..((((((((......)---).))).))).))))))).))))))))....((..(((((.((.......)).)))))..)). ( -33.00) >DroSec_CAF1 10307 93 - 1 GAUCUUGCCGCUGGUCAGCUUCUCGCCGGACUGGCCUGCGGCUGGACUUGCCGGCGGCAGGGUCAGCGAGGGAGUCUGCUCCUUGCGCUGA------CC ...((((((((((((.((((..((((.((.....)).))))..)).)).))))))))))))(((((((((((((....)))))).))))))------). ( -55.50) >DroSim_CAF1 10538 93 - 1 GAUCUUGCCGCUGGUCAGCUUCUCGCCGGACUGGCCUGCGGCUGGACUUGCCGGCGGCAGGGUCAGCGAGGGAGUCUGCUCCUUGCGCUGA------CC ...((((((((((((.((((..((((.((.....)).))))..)).)).))))))))))))(((((((((((((....)))))).))))))------). ( -55.50) >DroEre_CAF1 11832 90 - 1 GAUCUUGCCGCUGGCCAGCUUCUCUCCAGC---UCCUGCGGCAGGGCUGGCCGGCGGCAGGGUCAGCGAGGGAGUCUGCUCCUUGCGCUGG------CC ...(((((((((((((((((...((((.((---....)))).)))))))))))))))))))(((((((((((((....)))))).))))))------). ( -61.10) >DroYak_CAF1 10289 90 - 1 GAUCUUGCCGCUGGCCAGCUUCUCUCCGGC---UGCUGCGGCAGGGCUGGCCGGCGGCAGGGUCAGAGAUGGAGUCUGCUCCUUGCGCUGG------CA ...(((((((((((((((((...(((((.(---....)))).)))))))))))))))))))(((((.(..((((....))))...).))))------). ( -54.50) >consensus GAUCUUGCCGCUGGCCAGCUUCUCGCCGGACUGGCCUGCGGCUGGACUGGCCGGCGGCAGGGUCAGCGAGGGAGUCUGCUCCUUGCGCUGA______CC ((((((((((((((((((((..((((.((.....)).))))..)).))))))))))))))))))((((((((((....)))))).)))).......... (-44.82 = -46.80 + 1.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:22 2006