Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,077,161 – 11,077,257 |
Length | 96 |
Max. P | 0.516570 |
Location | 11,077,161 – 11,077,257 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 86.05 |
Mean single sequence MFE | -20.88 |
Consensus MFE | -13.50 |
Energy contribution | -13.62 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.21 |
Mean z-score | -1.90 |
Structure conservation index | 0.65 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11077161 96 - 27905053 UACUUUACUAAGGACCUUGUAGGGCAUACAUACAUAUGUAUGUAUGUAUGUGCUUGAAUAGAAUCCCUACGAAAGCAUAUUUUUGCACCUAUAAUG ................(((((((((((((((((....))))))))))((((((((...(((.....)))...)))))))).......))))))).. ( -28.90) >DroSec_CAF1 7054 88 - 1 UACUUCUCUAAGGACCUUGUAGGACAUA----CAUAU----GUAUGUAUGUGUUUGAAUAGGAUCCCUACGAACGUAUAUAUUUGCACCUAUAAUG ................((((((((((((----(((..----..))))))))(((((..((((...)))))))))(((......))).))))))).. ( -20.80) >DroSim_CAF1 7263 92 - 1 UACUUCUCUAAGGACCUUGUAGGACAUACAUACAUAU----GUAUGUAUGUGUUUGAAUAGAAUCCCUACGAACGUAUAUAUUUGCACCUAUAAUG ..........(((...(((((((((((((((((....----))))))))))((((.....)))).)))))))..(((......))).)))...... ( -23.90) >DroEre_CAF1 8475 88 - 1 UACUUGACUAAGGACCUUGUAGGGCAUACAUACAA--------AUGCAUGUGUUUGAAUAGAAUCCGUACGAACGUAUAUAUUUGCACCUAUAAUG ..(((.....)))...(((((((((((((((.(..--------..).)))))).......((((..((((....))))..)))))).))))))).. ( -15.70) >DroYak_CAF1 7014 88 - 1 UACUUGACUAAGGACCUUGUAGAGCAUAUGUGCAU--------AUGUAUGUGCUUGAAUAGAAUCCAAACGAACGUAUAUAUUUGCACCUAUAAUG ...........(((..((((.(((((((((.....--------...)))))))))..))))..)))........(((......))).......... ( -15.10) >consensus UACUUCACUAAGGACCUUGUAGGGCAUACAUACAUAU____GUAUGUAUGUGUUUGAAUAGAAUCCCUACGAACGUAUAUAUUUGCACCUAUAAUG ...........(((..((((.(((((((..(((((((....))))))))))))))..))))..)))........(((......))).......... (-13.50 = -13.62 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:20 2006