Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,072,949 – 11,073,065 |
Length | 116 |
Max. P | 0.911542 |
Location | 11,072,949 – 11,073,065 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 77.45 |
Mean single sequence MFE | -38.93 |
Consensus MFE | -20.67 |
Energy contribution | -21.15 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.27 |
Mean z-score | -2.23 |
Structure conservation index | 0.53 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911542 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11072949 116 + 27905053 AUUUACUUGCUAGAUGGGCUUAAUCCACCCAGGCAAAGUUGGGAUCCUUUUCGGGUUUCUGACCCA---UCACAGAGCCUAUCACCGGUAGCUCGCUGUUGUUGGAUCUGUACAGGCCA ........(((.(((((((((......(((((......))))).........(((((...))))).---.....))))))))).((..((((.....))))..)).........))).. ( -35.40) >DroSec_CAF1 2857 116 + 1 AUUUCCUUGCUAGAUGGGCUUAAUCCACCCAGGCAAAGUUGGGAUCCUUUUCGGGCUUCUGACCCA---UCACAGAGCCUAUCACCGGUAGCUCGCUGUUGUUGGCUCUGUACAGGCCA ........(((.((((((.........(((((......))))).......((((....))))))))---))((((((((...((.((((.....)))).))..))))))))...))).. ( -39.00) >DroSim_CAF1 2896 116 + 1 AUUUGCUUGCUAGAUGGGCUUAAUCCACCCAGGCAAAGUUGGGAUCCUUUUCGGGCUUCUGACCCA---UCACAGAGCCUAUCACCGGUAGCUCGCUGUUGUUGGCUCUGUACAGGCCA ....(((((...((((((.........(((((......))))).......((((....))))))))---))((((((((...((.((((.....)))).))..)))))))).))))).. ( -42.10) >DroEre_CAF1 4332 114 + 1 AU-----UGCUAGAAAGGUCUAAUCAACCCAGGCAAAGUUGGGAUCCUUUUCCGGCUUGUGCGGUAGGUUCACAGAACCUUUCACCGGUAACUCGGUGUUGUUGGAUCUGUACAGGCCA ..-----.(((.(..((((((((.((((((((((((((((((((.....))))))))).)))(((((((((...))))))...))).....)).)).))))))))))))...).))).. ( -40.50) >DroYak_CAF1 2882 114 + 1 GU-----UAUUAGAAAGGUCUAAUCAACCCAGGCAAAGUUGGGAUCCUUUUCCGGCUUUUGAGGUAGGUUCACAGAACCUAUCACCGGUAACUCGCUGUUGUUGGAUCGGUACAGGCCA ((-----(((((((....)))))).)))...(((((((((((((.....))))))))))((((((((((((...))))))))).((..((((.....))))..)).)))......))). ( -38.00) >DroMoj_CAF1 3281 95 + 1 ---------------GUGCCUAAUCGACCCAGGCAAAGUUGCCAUCCUUGUCCAGCUUGGC---------GACUCGGCUUAUCACCGGCAGCUCACUGUUGUUGGGUUUAUAGGUGCCC ---------------(..((((...(((((((((..((((((((..((.....))..))))---------))))..))))......((((((.....)))))))))))..))))..).. ( -38.60) >consensus AU_____UGCUAGAUGGGCCUAAUCCACCCAGGCAAAGUUGGGAUCCUUUUCCGGCUUCUGACCCA___UCACAGAGCCUAUCACCGGUAGCUCGCUGUUGUUGGAUCUGUACAGGCCA ............(((((((((......(((((......)))))..((......))...................))))))))).((..((((.....))))..)).............. (-20.67 = -21.15 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:19 2006