Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,069,404 – 11,069,496 |
Length | 92 |
Max. P | 0.768575 |
Location | 11,069,404 – 11,069,496 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -28.73 |
Consensus MFE | -19.75 |
Energy contribution | -20.25 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.12 |
Mean z-score | -1.82 |
Structure conservation index | 0.69 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768575 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11069404 92 + 27905053 GACCUGGCUUCAGCAGCGUGGUUUACAUAUAUUU------AAGU------AUAUGCAUGUGUGUGUGUGCUUGUGAGGGCGCGUGUGUUUGCGUUUUUAGCAUU ((((..(((.....)))..))))..........(------((((------(((((((....))))))))))))((((((((((......))))))))))..... ( -25.90) >DroSec_CAF1 13086 102 + 1 GACCUGGCUUCAGCAGCGUGGUUUACAUAUAUAUGGUCGUAUGUACAUAAAUAUGCAUGUGU--GUGUGCUUGGGGGAGCGCGUGUGUUUGCGUUGUUAGCAUU ......(((..(((((((..(..((((((((((((..(((((........))))))))))))--))((((((....)))))))))...)..))))))))))... ( -32.50) >DroSim_CAF1 13123 104 + 1 GACCUGGCUUCAGCAGCGUGGUUUACAUAUAUAUGGUCGUAUGUACAUAAAUAUGCAUGUGUGUGUGUGCUUGGGGGAGCGCGUGUGUUUGCGUUUUUAGCAUU ((((..(((.....)))..))))((((((((((((..(((((........)))))))))))))))))((((...(((((((((......))))))))))))).. ( -31.40) >DroYak_CAF1 13058 82 + 1 GACCUGGCUUCAGCAGCGUGGUUUUUAUAUG------------UAC----AUACGCAUGUGUGUGUGUGCU------GGCGCGCGUGUUUGCGUUUUUAGCAUU ......((((((((.(((((.......))))------------)((----((((((....)))))))))))------)).(((((....)))))....)))... ( -25.10) >consensus GACCUGGCUUCAGCAGCGUGGUUUACAUAUAUAU______AUGUAC____AUAUGCAUGUGUGUGUGUGCUUGGGGGAGCGCGUGUGUUUGCGUUUUUAGCAUU ......(((.....((((..(...((((((....................((((((....))))))((((((....)))))))))))))..))))...)))... (-19.75 = -20.25 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:15 2006