Locus 4062

Sequence ID 3R_DroMel_CAF1
Location 11,068,857 – 11,068,949
Length 92
Max. P 0.607558
window6510

overview

Window 0

Location 11,068,857 – 11,068,949
Length 92
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 75.34
Mean single sequence MFE -31.36
Consensus MFE -14.92
Energy contribution -16.80
Covariance contribution 1.88
Combinations/Pair 1.32
Mean z-score -1.79
Structure conservation index 0.48
SVM decision value 0.15
SVM RNA-class probability 0.607558
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11068857 92 - 27905053
CAAGACCCCGCAACGGAUGACGCAAGUUUUCUC--UCACAC--------AUACUCACUCAACCGAAAGUAGACUGUGACUGCAGU--GAGUGGGAAGCGGCACG
.......((((...(((.(((....))).))).--......--------...(((((((...(....)...(((((....)))))--)))))))..)))).... ( -29.10)
>DroSec_CAF1 12566 102 - 1
CAAGACCCCGCAACGGAUGACGCAAGUUUUCUC--UCAGACACACACGCACACUCAUUCAGACGAAAGGCGUCUUUGACUGCAGUGUGAGUGUGAAGCAGCACA
.........((...(((.(((....))).))).--.......(((((.((((((((.(((((((.....))))..))).)).)))))).)))))..))...... ( -32.40)
>DroSim_CAF1 12571 102 - 1
CAAGACCCCGCAACGGAUGACGCAAGUUUUCUC--UCAGACACGCACGCACACUCAACCAGACGAAAGGCGUCUUUGACUGCAGUGUGAGUGUGAAGCGGCACA
.......((((...(((.(((....))).))).--(((.((.((((((((...((((..(((((.....))))))))).))).))))).)).))).)))).... ( -34.60)
>DroYak_CAF1 12513 102 - 1
CAAGACCCCGCAACGGAUGACGCAAGUUUUCUC--UCAGACACACACACAUAUACACACAGACGAAAGGCGUCUGUGGCUGCAGUGUUAGUGUGAAGCGGCACA
.......((((...(((.(((....))).))).--.....(((((((((.......((((((((.....))))))))......))))..)))))..)))).... ( -35.32)
>DroAna_CAF1 12251 102 - 1
AACGUCGUCGCAUUGGAUGACGCAAGUUUGUUCGGCCAAGCAUACACACACACUCACACAUGGAAAAUGGAUGUGCGAAUGAGUU--UCCUGAGAAGCGGCACC
..(((((((......)))))))............(((.............((.((.(((((.........))))).)).)).(((--((....))))))))... ( -25.40)
>consensus
CAAGACCCCGCAACGGAUGACGCAAGUUUUCUC__UCAGACACACACACACACUCACACAGACGAAAGGCGUCUGUGACUGCAGUGUGAGUGUGAAGCGGCACA
.......((((...(((.(((....))).)))................(((((((...((((((.....))))))..((....))..)))))))..)))).... (-14.92 = -16.80 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:12 2006