Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,064,131 – 11,064,237 |
Length | 106 |
Max. P | 0.500000 |
Location | 11,064,131 – 11,064,237 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 81.58 |
Mean single sequence MFE | -31.00 |
Consensus MFE | -21.57 |
Energy contribution | -22.10 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.13 |
Mean z-score | -1.26 |
Structure conservation index | 0.70 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11064131 106 + 27905053 CUG-----------CUACUACGGUGCUUACUCACUUUCAGUUAGCCUUCGCAAGGCACAAUGAUGCAGCAGCUCCUUCAGUGCUAUCUCUUGGUGGAAUGAGCUGCGCAAGAAUAUU ..(-----------(.((....))))....((....(((....((((.....))))....)))(((.(((((((.(((...((((.....)))).))).)))))))))).))..... ( -31.50) >DroSec_CAF1 7787 106 + 1 CUG-----------CUAUUACGGUGCUUACUCACUUUCAGUUAGCCUUCGCAAGGCACAAUGAUGCAGCAGCUCCUUCAGUGCUAUCUCUUGGUGGAAUGAGCUGCGCAAGAAUAUU .((-----------(.((((..(((((((((.......)))..((....)).))))))..)))))))(((((((.(((...((((.....)))).))).)))))))........... ( -30.40) >DroSim_CAF1 7786 106 + 1 CUG-----------UUAUUACAGUGCUUACUCACUUUCAGUUAGCCUUCGCAAGGCACAAUGAUGCAGCAGCUCCUUCAGUGCUAUCUCUUGGUGGAAUGAGCUGCGCAAGAAUAUU (((-----------(....))))(((..........(((....((((.....))))....)))....(((((((.(((...((((.....)))).))).))))))))))........ ( -29.90) >DroEre_CAF1 7805 106 + 1 AUA-----------GUAUUACAGAGCUUACUCACUUUCAGUCAGCCUGCGCAGGGCACAAUGAUGCAGCAGCUCCUUCAGAGCAAUCUCUUGGUGGAAUGAGCUGCGCAGGAAUAUG ...-----------(((((...(((....)))............((((((((...(.....).))).(((((((.(((..(.(((....))).).))).))))))))))))))))). ( -31.90) >DroYak_CAF1 7817 106 + 1 CUA-----------GUAUUACGGAGCUUACUCACUUUCAGUUAGCCUGCGCAGGGCACAGUGAUACAGCAGCUCCUUUAGUGCUAUCUCUUGGUGGAAUGAGCUGCGCAGAAAUAUG ...-----------(((((((.(((....)))...........((((.....))))...))))))).(((((((.(((...((((.....)))).))).)))))))........... ( -32.50) >DroPer_CAF1 8292 117 + 1 AUAGGGCAUGGAGUGUAUUAGAGGCCUAACAUACCCUCUCCCAGCCUUCGUCGGGCACAAUGAUACAGCAGCUCCUUAAGAGCAAUCUCCUGGUGAAACGAACUAAGGGAAAAGAUC ...(((...((.((((.((((....)))).))))))...))).((((.....))))..............((((.....))))..((((.((((.......)))).))))....... ( -29.80) >consensus CUA___________GUAUUACAGUGCUUACUCACUUUCAGUUAGCCUUCGCAAGGCACAAUGAUGCAGCAGCUCCUUCAGUGCUAUCUCUUGGUGGAAUGAGCUGCGCAAGAAUAUU ........................((..........(((....((((.....))))....)))....(((((((.(((...((((.....)))).))).)))))))))......... (-21.57 = -22.10 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:11 2006