Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,063,855 – 11,063,950 |
Length | 95 |
Max. P | 0.613491 |
Location | 11,063,855 – 11,063,950 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 79.02 |
Mean single sequence MFE | -24.15 |
Consensus MFE | -15.19 |
Energy contribution | -15.05 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.37 |
Mean z-score | -1.46 |
Structure conservation index | 0.63 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613491 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11063855 95 + 27905053 GCCAUAAUUUCACUGGCGUGUGUUUUGCGGAAUUCACUCUUCGUUGAAUAGCACAGAAAAUAGGGAAACCU--UGAUUUGUGAGAUGUGAGUGUAAC ..........((((.((((.(((((.(((((........))))).))))).((((((....(((....)))--...))))))..)))).)))).... ( -26.20) >DroSec_CAF1 7511 95 + 1 GCCAUAAUUUCACUAGCAUGGGUUUUGCGAAAUUCACUCUUCGUUGAAUAGCACAGAAAAUAGGGAAACCU--UGAUUUGUGAGAUGUGAGUGUAAC ..........((((.((((..((((.(((((........))))).))))..((((((....(((....)))--...))))))..)))).)))).... ( -24.10) >DroSim_CAF1 7510 95 + 1 GCCAUAAUUUCACUAGCAUGGGUUUUGCGAAAUUCACUCUUCGUUGAAUAGCACAGAAAAUAGGGAAACCU--UGAUUUGUGAGAUGUGAGUGUAAC ..........((((.((((..((((.(((((........))))).))))..((((((....(((....)))--...))))))..)))).)))).... ( -24.10) >DroEre_CAF1 7529 97 + 1 GCCAUAAUUUCACUAGCAUGUGCUUUGCGAAAGUCGCUCUUUGUUGGAUAACACAGAAAAUAGGGAAACCUGAUGAAGAGUGAGAUGUUAACCUAAC ......((((((((..(((.......(((.....)))(((.((((....)))).)))...((((....)))))))...))))))))........... ( -23.60) >DroYak_CAF1 7541 97 + 1 GCCAUGAUUUCACUAGCAUGGGCUUUGCGAAAUUCACUCUUCGUUGGGUAACACAAAAAAUAGGGAAACCUUAUAAAGAGUGAGAUGUAAAUCCAAC ((..((....))...)).((((.((((((...(((((((((..(((.......))).....(((....)))....))))))))).)))))))))).. ( -23.50) >DroPer_CAF1 8024 94 + 1 GCCAUGAUUCUGCUGCUUUGGGCUUUUCGAAAAGCCUCCUUCGAUUCAUAGCACAGAAAAUAGGGGAACCUAAAGAAGAGCGUUAAAGGAUUCC--- (((....(((((.((((.((((((((....))))))((....))..)).)))))))))..((((....)))).....).)).............--- ( -23.40) >consensus GCCAUAAUUUCACUAGCAUGGGCUUUGCGAAAUUCACUCUUCGUUGAAUAGCACAGAAAAUAGGGAAACCU__UGAAGAGUGAGAUGUGAGUCUAAC ......(((((((........((((.(((((........))))).))))............(((....)))........)))))))........... (-15.19 = -15.05 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:10 2006