| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,509,599 – 1,509,695 |
| Length | 96 |
| Max. P | 0.888126 |
| Location | 1,509,599 – 1,509,695 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 67.58 |
| Mean single sequence MFE | -20.45 |
| Consensus MFE | -5.15 |
| Energy contribution | -6.39 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888126 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1509599 96 + 27905053 AGAUCGGAAGCUUGGUGCUCGAAAAAACAAUAACAAACCAAUCAUCAAUUCGGGUUGGAUUCAUCUAAGCUUCGAAAGAAGCAUUAGAUAUAUGUA ...(((..(((.....))))))..........(((..((((((.........))))))....(((((((((((....))))).))))))...))). ( -25.60) >DroSec_CAF1 11379 95 + 1 AGAUCGGAAGCUUGGUGCUCGAA-AAACAAUAACAAACCCACCAUCAAUUCAGGUUGGAUCCAUCUAAGCUUCGAAAGAAGCAUCUAAAAUAUGUG ((((.((((((.....)))....-.............((.(((.........))).)).)))))))..(((((....))))).............. ( -22.30) >DroSim_CAF1 9312 96 + 1 AGAUCGGAAGCUUGGUGCUCGAAAAAACAAUAACAAACCCAGCAUCAAUUCAGCUUGGUUUCAUCUAAGCUUCGAAAGAAGCAUCUAAAAUAUGUG ((((...((((((((((((.(.................).)))))))....)))))............(((((....))))))))).......... ( -21.83) >DroEre_CAF1 10377 77 + 1 AGAUCAAAAGCUUGGUGUUCCAAAAAUCAAUAACGAAAACCCUAUUAAUAUGGGUCGGAUCCCCGGAAUCA-------------ACGAA------G ..........(((.(((((((.................((((.........)))).((....)))))))..-------------)).))------) ( -13.50) >DroYak_CAF1 9933 83 + 1 AAAUCAGAAGUUUGGUGUUCCAAAUAUCAAUAAUAAAUCCACUAUCAAUUGGUGUUGGAUCACCUGUAAAA-------------CUGAAAUAUGUG ...((((......((((.(((((.(((((((................)))))))))))).)))).......-------------))))........ ( -19.01) >consensus AGAUCGGAAGCUUGGUGCUCGAAAAAACAAUAACAAACCCACCAUCAAUUCGGGUUGGAUCCAUCUAAGCUUCGAAAGAAGCAUCUGAAAUAUGUG .((((.(((..((((((.........................))))))))).))))............(((((....))))).............. ( -5.15 = -6.39 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:24 2006