Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,060,458 – 11,060,563 |
Length | 105 |
Max. P | 0.725616 |
Location | 11,060,458 – 11,060,563 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 79.32 |
Mean single sequence MFE | -22.56 |
Consensus MFE | -13.69 |
Energy contribution | -14.72 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.25 |
Mean z-score | -1.76 |
Structure conservation index | 0.61 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11060458 105 + 27905053 CUUGGCAAUUUGUUGGUUGCCCAUCUUCAGAUUGAUUUCGGCAUCUUCCAGCAGAACGCUAAUCUAAAAUAAUA--------UGUAGUCACUAAUAUAUGCAGAAUGAAA-AUA .(((((..((((((((.((((.(((........)))...))))....))))))))..)))))((.......(((--------(((........)))))).......))..-... ( -22.44) >DroPse_CAF1 4596 109 + 1 CUUGGCUAUCUGAUGAUUACCCAUUUUCACAUUCACAUCGGCAUCUUCCAGCAGCACGCAGAUCUGUAAUGGCAAUAAUCAAUCCAAUUAUCAGCCUUUUUAGCAACG-----A ....((((.(((((((((...........((((((.(((((......)).((.....)).))).)).))))..............)))))))))......))))....-----. ( -16.71) >DroSec_CAF1 4111 105 + 1 CUUAGCAAUUUGUUGGUUGCCCAUCUUCAGAUUGAUUUCGGCAUCUUCCAGCAGAACGCUAAUCUAAAAUAAUA--------UGAUAUCACUACUAAAUGUAGAAUGGAC-AUA .(((((..((((((((.((((.(((........)))...))))....))))))))..)))))((((........--------((....))((((.....))))..)))).-... ( -25.00) >DroSim_CAF1 4118 105 + 1 CUUAGCAAUUUGUUGGUUGCCCAUCUUCAGAUUGAUUUCGGCAUCUUCCAACAGAACGCUAAUCUAAAAUAAUA--------UGUAAUCACUACUAAAUGUAGAAUGGAC-AUA .(((((..((((((((.((((.(((........)))...))))....))))))))..)))))..........((--------(((.....((((.....)))).....))-))) ( -27.10) >DroEre_CAF1 4131 106 + 1 UUUAGCAAUUUGUUGGUUGCCCAUCUUCAGAUUGAUUUCGGCAUCUUCCAGCAGAACGCUUAUCUAAAAUAAUA--------UGCAAUUACUAACAUAUGUAGAAUUGAUUGUA ...(((..((((((((.((((.(((........)))...))))....))))))))..)))..............--------(((((((((((.(....))))...)))))))) ( -22.10) >DroYak_CAF1 4150 105 + 1 UUUGGCAAUUUGUUGAUUGCCCAUCUUCAGAUUGAUUUCGGCAUCUUCCAGUAGAACGCUUAUCUAUAAUAGUA--------UGCAAUUAAUCACAUAUGUAGAAUGGAU-AUA ...(((((((....)))))))(((((.((...(((((...((((((....(((((.......)))))...)).)--------)))....)))))....)).)).)))...-... ( -22.00) >consensus CUUAGCAAUUUGUUGGUUGCCCAUCUUCAGAUUGAUUUCGGCAUCUUCCAGCAGAACGCUAAUCUAAAAUAAUA________UGCAAUCACUAACAUAUGUAGAAUGGAC_AUA .(((((..((((((((.((((.(((........)))...))))....))))))))..))))).................................................... (-13.69 = -14.72 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:09 2006