Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,049,157 – 11,049,262 |
Length | 105 |
Max. P | 0.598782 |
Location | 11,049,157 – 11,049,262 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 83.39 |
Mean single sequence MFE | -32.78 |
Consensus MFE | -20.95 |
Energy contribution | -22.37 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.11 |
Mean z-score | -2.35 |
Structure conservation index | 0.64 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598782 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11049157 105 + 27905053 ----AUCGUCCUUCAAGCCCAGGGCAAAGUCUUGGGCUUCCCCGCCAUUCCUGAAAAUCCGCACAUACGCGGACUUCGGGCCAAACUUCCAAAUGGCGACGUAGGGCAA ----...(((((.((((((((((((...)))))))))))...(((((((((((((..(((((......))))).))))))...........)))))))..).))))).. ( -46.70) >DroPse_CAF1 3160 109 + 1 ACUAAUCAUCUUUGAAACCCAAACUAAACUCCUGUGCCUCACCUCCCUUUCGAAAGAUUCGCACGUAGGCGGACUUGACGCCAAACUUCCAAAUGGCAAUGUAGGGCAA .....(((....)))...................((((..((.......((....))(((((......)))))......((((..........))))...))..)))). ( -20.40) >DroSec_CAF1 1 109 + 1 UCUAAUCGUCCUUUAAGCCCAGUGCAAAGUCUUGAGCCUCCCCGCCUUUCCUGAAGAUCCGCACAUACGCGGACUUCGGGCCAAACUUCCAAAUGGCGACGUAGGGCAA .......(((((....(((...((..((((.(((.((......))....(((((((.(((((......)))))))))))).))))))).))...))).....))))).. ( -34.50) >DroSim_CAF1 1 108 + 1 -CUAAUCGUCCUUCAAGCCCAGGGCAAAAUCUUGGGCCUCCCCGCCUUUCCUGAAGAUCCGCACAUAAGCGGACUUCGGGCCAAACUUCCAAAUGGCGACGUAGGGCAA -......(((((.(..((((((((.....)))))))).....((((((((((((((.(((((......))))))))))))..........))).))))..).))))).. ( -42.90) >DroYak_CAF1 1 108 + 1 -CUAAUCGUCCUUCAAGCCCGAGGUAAAAUCUUGGGCCUCCCCUCCCUUCCUGAAGAUCCGCACAUACGCGAACUUUGGGCCAAACUUCCAAAUGGCGACGUAGGGCAA -......(((((.(..(((((((((...))))))))).............(..(((...(((......)))..)))..)((((..........))))...).))))).. ( -31.80) >DroPer_CAF1 3799 109 + 1 ACUAAUCAUCUUUGAAACCCAAACUAAACUCCUGUGCCUCACCUCCCUUUCGAAAGAUUCGCACGUAGGCGGACUUGACGCCAAACUUCCAAAUGGCAAUGUAGGGCAA .....(((....)))...................((((..((.......((....))(((((......)))))......((((..........))))...))..)))). ( -20.40) >consensus _CUAAUCGUCCUUCAAGCCCAAGGCAAAAUCUUGGGCCUCCCCGCCCUUCCUGAAGAUCCGCACAUACGCGGACUUCGGGCCAAACUUCCAAAUGGCGACGUAGGGCAA ................((((..............................((((((.(((((......)))))))))))((((..........))))......)))).. (-20.95 = -22.37 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:07 2006