Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,047,092 – 11,047,212 |
Length | 120 |
Max. P | 0.956940 |
Location | 11,047,092 – 11,047,212 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -48.83 |
Consensus MFE | -48.37 |
Energy contribution | -48.70 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.34 |
Structure conservation index | 0.99 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11047092 120 - 27905053 CUCCUCAAUAUACAGCCAGGGGUGUAUUGGUCCACCCAGAAACGUGGGCCGUUUCAUGCCGUGCUCCAGAAAGGCCUUGAUGGCCGGCGCCAAGGUGCCACGCACCAGGUCCGUUACAGU ..............(((.((.(((...((((((((........))))))))...))).))((((........((((.....))))(((((....)))))..))))..))).......... ( -46.90) >DroSec_CAF1 9862 120 - 1 CUCCUCAAUAUACAGCCAGGGGUGAAUUGGUCCACCCAGAAACGUGGGCCGUUUCAUGCCGUGCUCCAGAAAGGCCUUUAUGGCCGGCGCCAAGGUGCCACGCACCAGGUCCGUUACAGU ..............(((.((.(((((.((((((((........)))))))).))))).))((((........((((.....))))(((((....)))))..))))..))).......... ( -49.80) >DroSim_CAF1 9880 120 - 1 CUCCUCAAUAUACAGCCAGGGGUGAAUUGGUCCACCCAGAAACGUGGGCCGUUUCAUGCCGUGCUCCAGAAAGGCCUUGAUGGCCGGCGCCAAGGUGCCACGCACCAGGUCCGUUACAGU ..............(((.((.(((((.((((((((........)))))))).))))).))((((........((((.....))))(((((....)))))..))))..))).......... ( -49.80) >consensus CUCCUCAAUAUACAGCCAGGGGUGAAUUGGUCCACCCAGAAACGUGGGCCGUUUCAUGCCGUGCUCCAGAAAGGCCUUGAUGGCCGGCGCCAAGGUGCCACGCACCAGGUCCGUUACAGU ..............(((.((.(((((.((((((((........)))))))).))))).))((((........((((.....))))(((((....)))))..))))..))).......... (-48.37 = -48.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:00 2006