Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,046,812 – 11,046,972 |
Length | 160 |
Max. P | 0.897909 |
Location | 11,046,812 – 11,046,932 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -39.79 |
Consensus MFE | -37.96 |
Energy contribution | -37.52 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.71 |
Structure conservation index | 0.95 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11046812 120 + 27905053 CUACAGCACCGAGUCGCAUGCCAAGGACCACGAAAACUUUAUCAAUGUGGCAAGGACGCGAAAGCGAAGGGCUAAAGCCCUGCACGACUUUGAGCGGCACGACGACGAUGAGUUGGGAUU ...((((.(...(((((.((((.....(((((.............)))))(((((.(((....))).(((((....)))))......)))))...)))).).))))...).))))..... ( -40.02) >DroSec_CAF1 9582 120 + 1 CUACAGCACCGAGUCGCAUGCCAAGGACCACGAAAACUUUAUCAAUGUGGCAAGGACGCGAAAGCGAAGGGCUAAAGCCUUGCACGACUUUGAGCGGCACGACGACGAUGAGUUGGGAUU ...((((.(...(((((.((((.....(((((.............)))))(((((.(((....))).(((((....)))))......)))))...)))).).))))...).))))..... ( -37.32) >DroSim_CAF1 9600 120 + 1 CUACAGCACAGAGUCGCAUGCCAAGGACCACGAAAACUUUAUCAAUGUGGCAAGGACGCGAAAGCGUAGGGCUAAAGCCUUGCACGACUUUGAGCGGCACGACGAUGAUGAGUUGGGAUU ...((((.((..(((((.((((.....(((((.............)))))(((((..((....))(((((((....)))))))....)))))...)))).).))))..)).))))..... ( -42.02) >consensus CUACAGCACCGAGUCGCAUGCCAAGGACCACGAAAACUUUAUCAAUGUGGCAAGGACGCGAAAGCGAAGGGCUAAAGCCUUGCACGACUUUGAGCGGCACGACGACGAUGAGUUGGGAUU ...((((.(...(((((.((((.....(((((.............)))))(((((.(((....))).(((((....)))))......)))))...)))).).))))...).))))..... (-37.96 = -37.52 + -0.44)
Location | 11,046,852 – 11,046,972 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -37.70 |
Consensus MFE | -35.89 |
Energy contribution | -35.67 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.16 |
Structure conservation index | 0.95 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897909 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11046852 120 + 27905053 AUCAAUGUGGCAAGGACGCGAAAGCGAAGGGCUAAAGCCCUGCACGACUUUGAGCGGCACGACGACGAUGAGUUGGGAUUUCGGCGGAACGACAUCAUAACAAUCAUCAGUCAAAAAGAC .....(((.((((((.(((....))).(((((....)))))......))))..)).)))....((((((((((((.(((.(((......))).))).))))..))))).)))........ ( -38.80) >DroSec_CAF1 9622 120 + 1 AUCAAUGUGGCAAGGACGCGAAAGCGAAGGGCUAAAGCCUUGCACGACUUUGAGCGGCACGACGACGAUGAGUUGGGAUUUCGACGGAACGACAUCAUUACAAUCAUCAGUCAAAAAGAC .....(((.((((((.(((....))).(((((....)))))......))))..)).)))....((((((((.(((.(((.(((......))).)))....)))))))).)))........ ( -34.30) >DroSim_CAF1 9640 120 + 1 AUCAAUGUGGCAAGGACGCGAAAGCGUAGGGCUAAAGCCUUGCACGACUUUGAGCGGCACGACGAUGAUGAGUUGGGAUUUCGGCGGAACGACAUCAUUACAAUCAUCAGUCAAAAAGAC .....(((.((((((..((....))(((((((....)))))))....))))..)).))).(((((((((..((...(((.(((......))).)))...)).)))))).)))........ ( -40.00) >consensus AUCAAUGUGGCAAGGACGCGAAAGCGAAGGGCUAAAGCCUUGCACGACUUUGAGCGGCACGACGACGAUGAGUUGGGAUUUCGGCGGAACGACAUCAUUACAAUCAUCAGUCAAAAAGAC .....(((.((((((.(((....))).(((((....)))))......))))..)).))).(((...(((((.(((.(((.(((......))).)))....)))))))).)))........ (-35.89 = -35.67 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:59 2006