Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,046,292 – 11,046,412 |
Length | 120 |
Max. P | 0.669313 |
Location | 11,046,292 – 11,046,412 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -34.00 |
Consensus MFE | -34.00 |
Energy contribution | -34.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 1.00 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11046292 120 - 27905053 AAAUCUGUGCUGAGUUCUCGAGAUGCUUUAGAUCUUGCUCCUUCACCUUGAGCAUGCCCAGAGUCAACUGGAACAGCACGAUGGAGCCCUCGUAAAAGAACCAGUCCCAGAUACGCACAA ..(((((.((((.(((((((((..((((((.....(((((.........)))))(((((((......))))....)))...)))))).))))....)))))))))..)))))........ ( -34.00) >DroSec_CAF1 9062 120 - 1 AAAUCUGUGCUGAGUUCUCGAGAUGCUUUAGAUCUUGCUCCUUCACCUUGAGCAUGCCCAGAGUCAACUGGAACAGCACGAUGGAGCCCUCGUAAAAGAACCAGUCCCAGAUACGCACAA ..(((((.((((.(((((((((..((((((.....(((((.........)))))(((((((......))))....)))...)))))).))))....)))))))))..)))))........ ( -34.00) >DroSim_CAF1 9080 120 - 1 AAAUCUGUGCUGAGUUCUCGAGAUGCUUUAGAUCUUGCUCCUUCACCUUGAGCAUGCCCAGAGUCAACUGGAACAGCACGAUGGAGCCCUCGUAAAAGAACCAGUCCCAGAUACGCACAA ..(((((.((((.(((((((((..((((((.....(((((.........)))))(((((((......))))....)))...)))))).))))....)))))))))..)))))........ ( -34.00) >consensus AAAUCUGUGCUGAGUUCUCGAGAUGCUUUAGAUCUUGCUCCUUCACCUUGAGCAUGCCCAGAGUCAACUGGAACAGCACGAUGGAGCCCUCGUAAAAGAACCAGUCCCAGAUACGCACAA ..(((((.((((.(((((((((..((((((.....(((((.........)))))(((((((......))))....)))...)))))).))))....)))))))))..)))))........ (-34.00 = -34.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:57 2006