Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,045,493 – 11,045,733 |
Length | 240 |
Max. P | 0.940293 |
Location | 11,045,493 – 11,045,613 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -43.83 |
Consensus MFE | -43.62 |
Energy contribution | -43.40 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.15 |
Structure conservation index | 1.00 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11045493 120 - 27905053 CCUUGUUGUGUGAGAACUCCAGGUGGGCGAUCCACUGCAAUCGCUGCUGCGCGUCCUCUACAAAGGGUAUGCUCAGCAAUUUGUUGGAGCUCUGCUCCGGACCGUCCUCCUCCUCCACCC .......(((.(((......(((.(((((.(((...((((....(((((.((((.((((....)))).)))).)))))..)))).(((((...)))))))).))))).))).)))))).. ( -45.30) >DroSec_CAF1 8262 120 - 1 CCUUGUUGUGUGAGAAUUCCAGGUGGGCGAUCCACUGCAAUCGCUGCUGCGCGUCCUCCACAAAGGGUAUGCUUAGCAAUUUGUUGGAGCUCUGCUCCGGACCGUCCUCCUCCUCCACCC .......(((.(((......(((.(((((.(((...((((..((((..(((..((((......))))..))).))))...)))).(((((...)))))))).))))).))).)))))).. ( -42.10) >DroSim_CAF1 8280 120 - 1 CCUUGUUGUGUGAGAAUUCCAGGUGGGCGAUCCACUGCAAUCGCUGCUGCGCGUCCUCCACAAAGGGUAUGCUCAGCAAUUUGUUGGAGCUCUGCUCCGGACCGUCCUCCUCCUCCACCC .......(((.(((......(((.(((((.(((...((((....(((((.(((((((.......))).)))).)))))..)))).(((((...)))))))).))))).))).)))))).. ( -44.10) >consensus CCUUGUUGUGUGAGAAUUCCAGGUGGGCGAUCCACUGCAAUCGCUGCUGCGCGUCCUCCACAAAGGGUAUGCUCAGCAAUUUGUUGGAGCUCUGCUCCGGACCGUCCUCCUCCUCCACCC .......(((.(((......(((.(((((.(((...((((....(((((.((((.(((......))).)))).)))))..)))).(((((...)))))))).))))).))).)))))).. (-43.62 = -43.40 + -0.22)
Location | 11,045,613 – 11,045,733 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -41.50 |
Consensus MFE | -37.49 |
Energy contribution | -37.27 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.69 |
Structure conservation index | 0.90 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11045613 120 - 27905053 AUAGACGCAUCCACAUCUGGGCACGCAACGUGUGCGGGAUACCCUGACGGACCAUAUUGCGCAGCUUUUCUGUGCGUGGGAGCAUUACAUCCACAUGCUCCCAGCUCAGCUCGGCAGCCU ...(.((((......((((.((((((...))))))(((...)))...))))......))))).(((...(((.((.(((((((((.........))))))))))).)))...)))..... ( -43.50) >DroSec_CAF1 8382 120 - 1 AUAGACGCAUCCACAUCUGGGCACGCAACGUGUGCGGGAUACCCUGACGAACCAUAUUGCGCAACUUUUCUGUGCGUGGGAGCAUCACAUCCACAUGCUCCCAGCUCAGCUCGGCAGCCU .((((.(......).))))(((..((((..((((((((....)))).))...))..))))((.......(((.((.(((((((((.........))))))))))).)))....)).))). ( -38.40) >DroSim_CAF1 8400 120 - 1 AUAGACGCAUCCACAUCUGGGCACGCAACGUGUGCGGAAUACCCUGCCGGACCAUAUUGCGCAACUUUUCUGUGCGUGGGAGCAUCACAUCCACAUGCUCCCAGCUCAGCUCGGCAGCCU ...............((((.(((((...))))).)))).....((((((..(......(((((.......))))).(((((((((.........))))))))).....)..))))))... ( -42.60) >consensus AUAGACGCAUCCACAUCUGGGCACGCAACGUGUGCGGGAUACCCUGACGGACCAUAUUGCGCAACUUUUCUGUGCGUGGGAGCAUCACAUCCACAUGCUCCCAGCUCAGCUCGGCAGCCU ......((..((....(((((((((((.....((((.((((...((......)))))).)))).........)))))((((((((.........)))))))).))))))...))..)).. (-37.49 = -37.27 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:56 2006