Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,045,293 – 11,045,453 |
Length | 160 |
Max. P | 0.950278 |
Location | 11,045,293 – 11,045,413 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -49.30 |
Consensus MFE | -47.92 |
Energy contribution | -48.03 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.92 |
Structure conservation index | 0.97 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.849048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11045293 120 + 27905053 AGACGAUCUGGGAGAGCUGCCGCCUAUGAUGGAGGAACUAAGUGUGGCCGAUGGCCUGCGACCAAAUCCCGGUGGGCCAUUCUCCGCUCUUACCGCCUCCAUGUGGCCACAGGAAAUCCU .........((((...(((..(((....(((((((...((((.((((..(((((((..(............)..)))))))..)))).))))...)))))))..)))..)))....)))) ( -48.20) >DroSec_CAF1 8062 120 + 1 AGACGAUCUGGGUGAGCUGCCGCCCAUGAUGGAGGAACUAAGUGUGGCCGAUGGCCUGCGACCAAAUCCCGGUGGGCCAUUCUCCGCUCUUACCGCCUCUAUGUGGCCCCAGGAAAUCCU ......((((((......(((((.....(((((((...((((.((((..(((((((..(............)..)))))))..)))).))))...))))))))))))))))))....... ( -48.70) >DroSim_CAF1 8080 120 + 1 AGACGAUCUGGGUGAGCUGCCGCCCAUGAUGGAGGAACUAAGUGUGGCCGAUGGCCUGCGACCAAAUCCCGGUGGGCCAUUCUCCGCUCUUACCGCCUCCAUGUGGCCCCAGGAAAUCCU ......((((((......(((((.....(((((((...((((.((((..(((((((..(............)..)))))))..)))).))))...))))))))))))))))))....... ( -51.00) >consensus AGACGAUCUGGGUGAGCUGCCGCCCAUGAUGGAGGAACUAAGUGUGGCCGAUGGCCUGCGACCAAAUCCCGGUGGGCCAUUCUCCGCUCUUACCGCCUCCAUGUGGCCCCAGGAAAUCCU ......((((((......(((((.....(((((((...((((.((((..(((((((..(............)..)))))))..)))).))))...))))))))))))))))))....... (-47.92 = -48.03 + 0.11)
Location | 11,045,333 – 11,045,453 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -55.10 |
Consensus MFE | -55.10 |
Energy contribution | -55.10 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 1.00 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950278 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11045333 120 + 27905053 AGUGUGGCCGAUGGCCUGCGACCAAAUCCCGGUGGGCCAUUCUCCGCUCUUACCGCCUCCAUGUGGCCACAGGAAAUCCUAGCCAAGCUGGGCGGUGGCGCGGAAUUGGCUUCCGGCCCA ..((.(((((((((((..(............)..))))))..(((((.((.(((((((.....((((...(((....))).))))....))))))))).))))).........))))))) ( -55.00) >DroSec_CAF1 8102 120 + 1 AGUGUGGCCGAUGGCCUGCGACCAAAUCCCGGUGGGCCAUUCUCCGCUCUUACCGCCUCUAUGUGGCCCCAGGAAAUCCUAGCCAAGCUGGGCGGUGGCGCGGAAUUGGCUUCCGGCCCA ..((.(((((((((((..(............)..))))))..(((((.((.(((((((.....((((...(((....))).))))....))))))))).))))).........))))))) ( -55.00) >DroSim_CAF1 8120 120 + 1 AGUGUGGCCGAUGGCCUGCGACCAAAUCCCGGUGGGCCAUUCUCCGCUCUUACCGCCUCCAUGUGGCCCCAGGAAAUCCUAGCCAAGCUGGGCGGUGGUGCGGAAUUGGCUUCCGGCCCA ..((.(((((((((((..(............)..))))))..(((((.((.(((((((.....((((...(((....))).))))....))))))))).))))).........))))))) ( -55.30) >consensus AGUGUGGCCGAUGGCCUGCGACCAAAUCCCGGUGGGCCAUUCUCCGCUCUUACCGCCUCCAUGUGGCCCCAGGAAAUCCUAGCCAAGCUGGGCGGUGGCGCGGAAUUGGCUUCCGGCCCA ..((.(((((((((((..(............)..))))))..(((((.((.(((((((.....((((...(((....))).))))....))))))))).))))).........))))))) (-55.10 = -55.10 + 0.00)
Location | 11,045,333 – 11,045,453 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -52.27 |
Consensus MFE | -52.27 |
Energy contribution | -52.27 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.31 |
Structure conservation index | 1.00 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11045333 120 - 27905053 UGGGCCGGAAGCCAAUUCCGCGCCACCGCCCAGCUUGGCUAGGAUUUCCUGUGGCCACAUGGAGGCGGUAAGAGCGGAGAAUGGCCCACCGGGAUUUGGUCGCAGGCCAUCGGCCACACU ..((((((.......((((((...(((((((....((((((((....)))..)))))....).))))))....))))))..(((((.((((.....))))....)))))))))))..... ( -53.00) >DroSec_CAF1 8102 120 - 1 UGGGCCGGAAGCCAAUUCCGCGCCACCGCCCAGCUUGGCUAGGAUUUCCUGGGGCCACAUAGAGGCGGUAAGAGCGGAGAAUGGCCCACCGGGAUUUGGUCGCAGGCCAUCGGCCACACU ..((((((.......((((((...(((((((....((((((((....)))..)))))....).))))))....))))))..(((((.((((.....))))....)))))))))))..... ( -51.90) >DroSim_CAF1 8120 120 - 1 UGGGCCGGAAGCCAAUUCCGCACCACCGCCCAGCUUGGCUAGGAUUUCCUGGGGCCACAUGGAGGCGGUAAGAGCGGAGAAUGGCCCACCGGGAUUUGGUCGCAGGCCAUCGGCCACACU ..((((((.......((((((...(((((((....((((((((....)))..)))))....).))))))....))))))..(((((.((((.....))))....)))))))))))..... ( -51.90) >consensus UGGGCCGGAAGCCAAUUCCGCGCCACCGCCCAGCUUGGCUAGGAUUUCCUGGGGCCACAUGGAGGCGGUAAGAGCGGAGAAUGGCCCACCGGGAUUUGGUCGCAGGCCAUCGGCCACACU ..((((((.......((((((...(((((((....((((((((....)))..)))))....).))))))....))))))..(((((.((((.....))))....)))))))))))..... (-52.27 = -52.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:53 2006