Locus 4051

Sequence ID 3R_DroMel_CAF1
Location 11,044,244 – 11,044,364
Length 120
Max. P 0.500000
window6490

overview

Window 0

Location 11,044,244 – 11,044,364
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -45.10
Consensus MFE -44.30
Energy contribution -44.63
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.98
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11044244 120 - 27905053
CACUGGACACUUGCGAGUGGCGACGCACUUUCCAACGCCCCACGAAACAUGUUCGCUUGGAAGCCCAGGCACAGCAGUUCAAUGUUGCGGCCUUGGAGAAGUACAAGCAGGGUGACUGGA
..(..(.(((((((..(((....)))(((((((((.(((...............((((((....)))))).(((((......))))).))).)))))).)))....))).)))).)..). ( -42.10)
>DroSec_CAF1 6993 120 - 1
CACUGGACACUUGCGAGUGGCGACGCACUUUCCAACGCCCCACGAAACAUGUUCGCUUGGAGGCCCAGGCGCAGCAGUUCAAUGUUGCGGCCUUGGAGAAGUACAAGCAGGGUGACUGGA
..(..(.(((((((..(((....)))(((((((((.(((...............((((((....))))))((((((......))))))))).)))))).)))....))).)))).)..). ( -46.60)
>DroSim_CAF1 7013 120 - 1
CACUGGACACUUGCGAGUGGCGACGCACUUUCCAACGCCCCACGAAACAUGUUCGCUUGGAGGCCCAGGCGCAGCAGUUCAAUGUUGCGGCCUUGGAGAAGUACAAGCAGGGUGACUGGA
..(..(.(((((((..(((....)))(((((((((.(((...............((((((....))))))((((((......))))))))).)))))).)))....))).)))).)..). ( -46.60)
>consensus
CACUGGACACUUGCGAGUGGCGACGCACUUUCCAACGCCCCACGAAACAUGUUCGCUUGGAGGCCCAGGCGCAGCAGUUCAAUGUUGCGGCCUUGGAGAAGUACAAGCAGGGUGACUGGA
..(..(.(((((((..(((....)))(((((((((.(((...............((((((....))))))((((((......))))))))).)))))).)))....))).)))).)..). (-44.30 = -44.63 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:50 2006