Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,042,244 – 11,042,364 |
Length | 120 |
Max. P | 0.835995 |
Location | 11,042,244 – 11,042,364 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -50.07 |
Consensus MFE | -48.65 |
Energy contribution | -48.77 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.02 |
Mean z-score | -1.91 |
Structure conservation index | 0.97 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11042244 120 + 27905053 GUCCGCCUGGACACUUGGUGAAAGUUUGCGCUUGGUGCUGCUUGUUCGUCGCACGGGUUGCUUGCUUUUUGGCAAGUCGCAGGCCACAGCGGCAGAGUGCAGGCGAUUGUCCUGUUUGUA ((((....))))((..((..(..((((((((((..(((((((.((..(((...(((.(((((........))))).)))..))).)))))))))))))))))))..)..))..))..... ( -45.40) >DroSec_CAF1 4993 120 + 1 GUCCGCCUGGACACUUGGCGAAAGUUUGCGCUUGGUGCUGCUUGUGCGUCGCACGGGUUGCUUGCUUUUUGGCAAGUCGCAGGCCACAGCGGCAGAGUGCAGGCGAUUGUCCUGUUUGUA ((((....))))((..(((((..((((((((((..(((((((.(((.(((...(((.(((((........))))).)))..)))))))))))))))))))))))..)))))..))..... ( -52.40) >DroSim_CAF1 5013 120 + 1 GUCCGCCUGGACACUUGGCGAAAGUUUGCGCUUGGUGCUGCUUGUGCGUCGCACGGGUUGCUUGCUUUUUGGCAAGUCGCAGGCCACAGCGGCAGAGUGCAGGCGAUUGUCCUGUUUGUA ((((....))))((..(((((..((((((((((..(((((((.(((.(((...(((.(((((........))))).)))..)))))))))))))))))))))))..)))))..))..... ( -52.40) >consensus GUCCGCCUGGACACUUGGCGAAAGUUUGCGCUUGGUGCUGCUUGUGCGUCGCACGGGUUGCUUGCUUUUUGGCAAGUCGCAGGCCACAGCGGCAGAGUGCAGGCGAUUGUCCUGUUUGUA ((((....))))((..(((((..((((((((((..(((((((.(((.(((...(((.(((((........))))).)))..)))))))))))))))))))))))..)))))..))..... (-48.65 = -48.77 + 0.11)
Location | 11,042,244 – 11,042,364 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -37.30 |
Consensus MFE | -36.03 |
Energy contribution | -36.37 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.97 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.689397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11042244 120 - 27905053 UACAAACAGGACAAUCGCCUGCACUCUGCCGCUGUGGCCUGCGACUUGCCAAAAAGCAAGCAACCCGUGCGACGAACAAGCAGCACCAAGCGCAAACUUUCACCAAGUGUCCAGGCGGAC ..............(((((((.((..(((.(((.(((.(((((.(((((......))))))....((.....)).....))))..))))))))).((((.....)))))).))))))).. ( -34.30) >DroSec_CAF1 4993 120 - 1 UACAAACAGGACAAUCGCCUGCACUCUGCCGCUGUGGCCUGCGACUUGCCAAAAAGCAAGCAACCCGUGCGACGCACAAGCAGCACCAAGCGCAAACUUUCGCCAAGUGUCCAGGCGGAC ..............(((((((((((..((((((.(((.(((((.(((((......)))))).....((((...))))..))))..))))))).........))..))))..))))))).. ( -38.80) >DroSim_CAF1 5013 120 - 1 UACAAACAGGACAAUCGCCUGCACUCUGCCGCUGUGGCCUGCGACUUGCCAAAAAGCAAGCAACCCGUGCGACGCACAAGCAGCACCAAGCGCAAACUUUCGCCAAGUGUCCAGGCGGAC ..............(((((((((((..((((((.(((.(((((.(((((......)))))).....((((...))))..))))..))))))).........))..))))..))))))).. ( -38.80) >consensus UACAAACAGGACAAUCGCCUGCACUCUGCCGCUGUGGCCUGCGACUUGCCAAAAAGCAAGCAACCCGUGCGACGCACAAGCAGCACCAAGCGCAAACUUUCGCCAAGUGUCCAGGCGGAC ..............(((((((.((..(((.(((.(((.(((((.(((((......)))))).....((((...))))..))))..))))))))).((((.....)))))).))))))).. (-36.03 = -36.37 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:44 2006