Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,041,044 – 11,041,164 |
Length | 120 |
Max. P | 0.872505 |
Location | 11,041,044 – 11,041,164 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -41.40 |
Consensus MFE | -41.29 |
Energy contribution | -41.07 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.86 |
Structure conservation index | 1.00 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872505 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11041044 120 - 27905053 CAUGAACUUGAAGAUCACCAAGGUGCAUGAGAAUCCCUACACGGAUCUCAUGUACGAGGUGCUCAACGAUCAGAAUCUGUGGGCCGUUUGCGGUCGCUCAGCGGGUAAGUUGGAUUCUCU ..(((..(((..((.((((...((((((((((.(((......)))))))))))))..)))).))..))))))(((((....(((((....)))))...((((......)))))))))... ( -42.70) >DroSec_CAF1 3793 120 - 1 CAUGAACUUGAAGAUCACCAAGGUGCAUGAGAAUCCUUACACGGAUCUCAUGUACGAGGUGCUUAACGAUCAGAAUCUGUGGGCCGUUUGCGGUCGCUCAGCGGGUAAGUUGGAUUCUUC ..(((.(...(((..((((...((((((((((.(((......)))))))))))))..)))))))...).)))(((((....(((((....)))))...((((......)))))))))... ( -41.00) >DroSim_CAF1 3813 120 - 1 CAUGAACUUGAAGAUCACCAAGGUGCAUGAGAAUCCCUACACGGAUCUCAUGUACGAGGUGCUUAACGAUCAGAAUCUGUGGGCCGUUUGCGGUCGCUCAGCGGGUAAGUUGGAUUCUCU ..(((.(...(((..((((...((((((((((.(((......)))))))))))))..)))))))...).)))(((((....(((((....)))))...((((......)))))))))... ( -40.50) >consensus CAUGAACUUGAAGAUCACCAAGGUGCAUGAGAAUCCCUACACGGAUCUCAUGUACGAGGUGCUUAACGAUCAGAAUCUGUGGGCCGUUUGCGGUCGCUCAGCGGGUAAGUUGGAUUCUCU ..(((..(((..((.((((...((((((((((.(((......)))))))))))))..)))).))..))))))(((((....(((((....)))))...((((......)))))))))... (-41.29 = -41.07 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:42 2006