Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,040,659 – 11,040,819 |
Length | 160 |
Max. P | 0.938209 |
Location | 11,040,659 – 11,040,779 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -44.13 |
Consensus MFE | -42.59 |
Energy contribution | -42.60 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.08 |
Mean z-score | -1.63 |
Structure conservation index | 0.97 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11040659 120 + 27905053 AGGGAUGCACCUUGGAGUGGCCAUCGGUUUUACUUUUGCCACCGGCAGUAUACUUGGAUAAUCGAAUGCUGGGCAUUGGUAGAAAGCCGGUGCUCAGCGGCAUUACAUCCAGCGAUAUGG ..((((((((......)))(((.((((((...(..(((((...))))).......)...))))))..(((((((((((((.....))))))))))))))))....))))).......... ( -44.30) >DroSec_CAF1 3411 120 + 1 AGGGAUGCACCUUGGAGUGGCCAUCGGUCUUACUUUUGCCACCGGCAGUGUAUUUGGACAAUCGAAUGCUGGGCAUUGGCAGAAAGCCGGUACUCAGCGGCAUUACAUCCAGCGAUAUGG ..((((((((......)))(((.((((((((((..(((((...))))).)))...))))...)))..((((((.((((((.....)))))).)))))))))....))))).......... ( -41.70) >DroSim_CAF1 3418 120 + 1 AGGGAUGCACCUUGGAGUGGCCAUCGGUCUUACUUUUGCCACCGGCUGUGUAUUUGGACAAUCGAAUGCUGGGCAUUGGCAGAAAGCCGGUGCUCAGCGGCAUCACAUCCAGCGAUAUGG (((......)))((((((((((.((((((((((....(((...)))...)))...))))...)))..(((((((((((((.....))))))))))))))))..))).))))......... ( -46.40) >consensus AGGGAUGCACCUUGGAGUGGCCAUCGGUCUUACUUUUGCCACCGGCAGUGUAUUUGGACAAUCGAAUGCUGGGCAUUGGCAGAAAGCCGGUGCUCAGCGGCAUUACAUCCAGCGAUAUGG ..((((((((......)))(((.(((((((.....(((((...))))).......))))...)))..(((((((((((((.....))))))))))))))))....))))).......... (-42.59 = -42.60 + 0.01)
Location | 11,040,699 – 11,040,819 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -42.00 |
Consensus MFE | -39.60 |
Energy contribution | -39.49 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.40 |
Structure conservation index | 0.94 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938209 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11040699 120 + 27905053 ACCGGCAGUAUACUUGGAUAAUCGAAUGCUGGGCAUUGGUAGAAAGCCGGUGCUCAGCGGCAUUACAUCCAGCGAUAUGGAAUGACUGUCGACGUCCUUCAUGGAUACGACACCUAAAAG ..(((((((.................((((((((((((((.....))))))))))))))......((((((......))).))))))))))..((((.....)))).............. ( -41.40) >DroSec_CAF1 3451 120 + 1 ACCGGCAGUGUAUUUGGACAAUCGAAUGCUGGGCAUUGGCAGAAAGCCGGUACUCAGCGGCAUUACAUCCAGCGAUAUGGAAUGACUGUCGACGUCCUUCAUGGAUACGACACCUAAAAG ..((((((((((((((......)))))((((((.((((((.....)))))).)))))).))....((((((......))).))))))))))..((((.....)))).............. ( -37.50) >DroSim_CAF1 3458 120 + 1 ACCGGCUGUGUAUUUGGACAAUCGAAUGCUGGGCAUUGGCAGAAAGCCGGUGCUCAGCGGCAUCACAUCCAGCGAUAUGGAAUGACUGUCGACGUCCUUCAUGGAUACGACACCUAAAAG ...((.(((((((((((((........(((((((((((((.....)))))))))))))(((((((..((((......)))).))).))))...)))).....)))))).)))))...... ( -47.10) >consensus ACCGGCAGUGUAUUUGGACAAUCGAAUGCUGGGCAUUGGCAGAAAGCCGGUGCUCAGCGGCAUUACAUCCAGCGAUAUGGAAUGACUGUCGACGUCCUUCAUGGAUACGACACCUAAAAG ...(((..(((..(((((........((((((((((((((.....))))))))))))))........)))))..)))..)......(((((..((((.....)))).)))))))...... (-39.60 = -39.49 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:41 2006