Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,040,506 – 11,040,619 |
Length | 113 |
Max. P | 0.577255 |
Location | 11,040,506 – 11,040,619 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -29.44 |
Consensus MFE | -28.60 |
Energy contribution | -28.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.97 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11040506 113 - 27905053 GAUCCAUGUCAUCGCAAGUGUGGCGGGGGAUCAAUGAGAAGCCAA-------ACGAAUUAAUUGCAAUGUACUCAUAGCACAUAUGGCCCAUGGCCAAGUAUUAUUAAUUAUUUAUCGCC (((((.(((((((....).))))))..)))))........((...-------...((((((((((.(((....))).)))....(((((...)))))......))))))).......)). ( -29.52) >DroSec_CAF1 3251 120 - 1 GAUCCAUGUCAUCGCAAGUGUGGCGGGGGAUCAAUAAGAAGCCAAAUUGAAAACGAAUUAAUUGCAAUGUACUCAUAGCACAUAUGGCCCAUGGCCAAGUAUUAUUAAUUAUUUAUCGUC (((((.(((((((....).))))))..)))))....................((((......(((.(((....))).)))....(((((...)))))..................)))). ( -29.50) >DroSim_CAF1 3258 120 - 1 GAUCCAUGUCAUCGCAAGUGUGGCGGGGGAUCAAUAAGAAGCCAAAUUGAAAACGAAUUAAUUGCAAUGUACUCAUAGCACAUAUGGCCCAUGGCCAAGUAUUAUUAAUUAUUUAUCGCC (((((.(((((((....).))))))..)))))................((.....((((((((((.(((....))).)))....(((((...)))))......))))))).....))... ( -29.30) >consensus GAUCCAUGUCAUCGCAAGUGUGGCGGGGGAUCAAUAAGAAGCCAAAUUGAAAACGAAUUAAUUGCAAUGUACUCAUAGCACAUAUGGCCCAUGGCCAAGUAUUAUUAAUUAUUUAUCGCC (((((.(((((((....).))))))..))))).......................((((((((((.(((....))).)))....(((((...)))))......))))))).......... (-28.60 = -28.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:39 2006