Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,040,289 – 11,040,409 |
Length | 120 |
Max. P | 0.810682 |
Location | 11,040,289 – 11,040,409 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -41.60 |
Consensus MFE | -40.44 |
Energy contribution | -40.33 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.81 |
Structure conservation index | 0.97 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810682 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11040289 120 + 27905053 GCUGUAGAGCUUCAGUGCCCUCGCCUGGAGUUUAAUGUACUGGAAUGGAAUCCUGCACGCAAGUUCUACGAAAGUCUUGGUGCCGUGGAUUUGACAGAUAAAGAGGGCUGGCACUACUAC ...((((.(((.....((((((..(((.(((.......)))....(.((((((.((((.((((....((....))))))))))...)))))).)))).....)))))).))).))))... ( -39.40) >DroSec_CAF1 3034 120 + 1 GCAGUAGAGCUUCAGUGCCCUCGCCUGGAGUUCAAUGUACUUGAAUGGAAUCCUGCACGCAAGUUCUACGAAAGUCUUGGUGCCGUGGAUUUGACGGAUAAAGAGGGCUGGCACUACUAC ..(((((.(((.....((((((.((....((((((.....)))))).((((((.((((.((((....((....))))))))))...))))))...)).....)))))).))).))))).. ( -43.40) >DroSim_CAF1 3041 120 + 1 GCAGUAGAGCUUCAGUGCCCUCCCCUGGAGUUCAAUGUACUUGAAUGGAAUCCUGCACCCAAGUUCUACGAAAGUCUUGGUGCCGUGGAUUUGACGGAUAAAGAGGGCUGGCACUACUAC ..(((((.(((.....((((((..(((..((((((.....)))))).((((((.(((((.(((....((....))))))))))...))))))..))).....)))))).))).))))).. ( -42.00) >consensus GCAGUAGAGCUUCAGUGCCCUCGCCUGGAGUUCAAUGUACUUGAAUGGAAUCCUGCACGCAAGUUCUACGAAAGUCUUGGUGCCGUGGAUUUGACGGAUAAAGAGGGCUGGCACUACUAC ...((((.(((.....((((((..(((..((((((.....)))))).((((((.((((.((((....((....))))))))))...))))))..))).....)))))).))).))))... (-40.44 = -40.33 + -0.11)
Location | 11,040,289 – 11,040,409 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -36.83 |
Consensus MFE | -33.67 |
Energy contribution | -34.67 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.91 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11040289 120 - 27905053 GUAGUAGUGCCAGCCCUCUUUAUCUGUCAAAUCCACGGCACCAAGACUUUCGUAGAACUUGCGUGCAGGAUUCCAUUCCAGUACAUUAAACUCCAGGCGAGGGCACUGAAGCUCUACAGC ((((.(((..((((((((....((((...........((((((((.((.....))..)))).)))).(((......)))..............)))).))))))..))..)))))))... ( -33.20) >DroSec_CAF1 3034 120 - 1 GUAGUAGUGCCAGCCCUCUUUAUCCGUCAAAUCCACGGCACCAAGACUUUCGUAGAACUUGCGUGCAGGAUUCCAUUCAAGUACAUUGAACUCCAGGCGAGGGCACUGAAGCUCUACUGC (((((((.((((((((((...........(((((...((((((((.((.....))..)))).)))).)))))...(((((.....)))))........))))))..))..)).))))))) ( -37.60) >DroSim_CAF1 3041 120 - 1 GUAGUAGUGCCAGCCCUCUUUAUCCGUCAAAUCCACGGCACCAAGACUUUCGUAGAACUUGGGUGCAGGAUUCCAUUCAAGUACAUUGAACUCCAGGGGAGGGCACUGAAGCUCUACUGC (((((((.(((((((((((((........(((((...((((((((.((.....))..))).))))).)))))...(((((.....))))).....)))))))))..))..)).))))))) ( -39.70) >consensus GUAGUAGUGCCAGCCCUCUUUAUCCGUCAAAUCCACGGCACCAAGACUUUCGUAGAACUUGCGUGCAGGAUUCCAUUCAAGUACAUUGAACUCCAGGCGAGGGCACUGAAGCUCUACUGC (((((((.((((((((((...........(((((...((((((((.((.....))..)))).)))).)))))...(((((.....)))))........))))))..))..)).))))))) (-33.67 = -34.67 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:38 2006