Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,040,009 – 11,040,129 |
Length | 120 |
Max. P | 0.683420 |
Location | 11,040,009 – 11,040,129 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -37.10 |
Consensus MFE | -34.29 |
Energy contribution | -33.97 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.15 |
Mean z-score | -1.70 |
Structure conservation index | 0.92 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11040009 120 + 27905053 AGAUCUUAAACGAGACGCAGGACUCACUGGUGGCCAGGAGUAUUGUGAAGUCUAUGUGCUUGUAGACAACGAUACUGAGUAAGUGCUGUAGUUCUUGGCAUGACCUGAUUAACUUGUGGG .........(((((...((((((((.((((...)))).((((((((...((((((......)))))).))))))))))))..((((((.......))))))..)))).....)))))... ( -36.80) >DroSec_CAF1 2754 120 + 1 AGAUCUUAAACGCGAUGCAGGUCUCACUGGUGGCCAGGAGUAUUGUGAAGUCUAUGUGCUUGUAGACAACGAUACUGAGUAAGUACUGUAGUUCUUGGCAUGAGCUAAUUAACCUGCAGC ...............(((((((.....((((.((((((((((((((...((((((......)))))).)))))))..(((....))).....)))))))....))))....))))))).. ( -38.20) >DroSim_CAF1 2761 120 + 1 AGAUCUUAAACGCGAUGCAGGUCUCACUGGUGGCCAGGAGUAUUGUGAAGUCUAUGUGCUUGUAGACAACGAGACUGAGUAAAUACUGUAGUUCUUGGCAUGGGCUAAAUAACCUGCAGC ...............((((((((((.((((...)))))))...(((..(((((((((..(((....)))(((((((((((....))).))).))))))))))))))..)))))))))).. ( -36.30) >consensus AGAUCUUAAACGCGAUGCAGGUCUCACUGGUGGCCAGGAGUAUUGUGAAGUCUAUGUGCUUGUAGACAACGAUACUGAGUAAGUACUGUAGUUCUUGGCAUGAGCUAAUUAACCUGCAGC ...............(((((((.....((((.((((((((((((((...((((((......)))))).)))))))..(((....))).....)))))))....))))....))))))).. (-34.29 = -33.97 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:36 2006