Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,033,524 – 11,033,644 |
Length | 120 |
Max. P | 0.538155 |
Location | 11,033,524 – 11,033,644 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.25 |
Mean single sequence MFE | -50.22 |
Consensus MFE | -36.54 |
Energy contribution | -37.06 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.08 |
Mean z-score | -1.66 |
Structure conservation index | 0.73 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11033524 120 + 27905053 ACUAGGACCUGCUGUUUGUUUAAUGCCCAUCCCAGGUUCAGUGCCUGGGCCAGCUCACGUUCCGUCUGCUCGGAGGAACUGAAGUAGGCGAGGAGCAGGGCGUUGUAGGUGCUGAACGGC ..(((.((((((.........(((((((..(((((((.....)))))))...((((.(....(((((((((((.....))).)))))))).))))).))))))))))))).)))...... ( -52.40) >DroSec_CAF1 8823 120 + 1 ACUAAGACCUGCUGCUUGCUGGAGGCCCAUCCCAGGUUCAGUGCCUGCGCAAGCUCAUGUUCCGUCUGCUCGGAGGAACUGAAGUAGGCGAGGAGCAGGGCGUUGUAGGUGCUGAACGGG .......((.........((((.((....))))))((((((..((((((...((((.((((((((((((((((.....))).)))))))..))))))))))..))))))..)))))))). ( -53.90) >DroSim_CAF1 9508 120 + 1 ACUAAGACCUGCUGCUUGCUGGAGGCCCAUCCCAGGUUCAGUGCCUGCGCAAGCUCACGUUCCGUCUGCUCGGAGGAACUGAAGUAGGCGAGGAGCAGGGCGUUGUAGGUGCUGAACGGG .......((.........((((.((....))))))((((((..((((((...((((..(((((((((((((((.....))).)))))))..))))).))))..))))))..)))))))). ( -51.30) >DroEre_CAF1 11587 120 + 1 GUUAGGACCUGCUGCUUGCUGGAAGCCCAUCCCAAAUUCAGUCCCUGGGCCAGCUCACUUUCCGUCGCCCCGGAGGAACUGAAGUAGGCGAGGAGCAGGGCGUUAUAGGUGCUAAACGGC .......((((((.(((((((((......)))....(((((((((((((.(.((.........)).).))))).)).))))))...)))))).)))))).((((.(((...))))))).. ( -43.00) >DroYak_CAF1 8995 120 + 1 GACCGGACCUGCUGCUUGCUGGAUGCCCAUCCCAAAUUCAGUGCCUGGGCCAGCUCACGUUCCGUAUCCUCGGAGGCACUGAAGUAGGCGAGGAGCAGAGCGUUAUAGGUGCUGAACGGC ..(((...(((((.((((((((((....))))....(((((((((((((....))))...((((......)))))))))))))...)))))).)))))((((.......))))...))). ( -50.50) >consensus ACUAGGACCUGCUGCUUGCUGGAGGCCCAUCCCAGGUUCAGUGCCUGGGCCAGCUCACGUUCCGUCUGCUCGGAGGAACUGAAGUAGGCGAGGAGCAGGGCGUUGUAGGUGCUGAACGGC .......((((((.(((((((((......)))....((((((.((((((....))))...((((......)))))).))))))...)))))).)))))).((((.(((...))))))).. (-36.54 = -37.06 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:30 2006