Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,033,164 – 11,033,284 |
Length | 120 |
Max. P | 0.797762 |
Location | 11,033,164 – 11,033,284 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.42 |
Mean single sequence MFE | -44.80 |
Consensus MFE | -37.86 |
Energy contribution | -38.14 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.11 |
Mean z-score | -1.34 |
Structure conservation index | 0.85 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11033164 120 + 27905053 CGCUCGUUAAUGAAGAAUGGCUUCAAGGCGGUCUCCUCCACCUUGAACUGGCUGAGCCACUGGCCCUUCAUGUAGGCGGCGUUGGCCAGCACCAACAUGGUGUGGGGUGUGAUCUCCUCG ..........(((((.....)))))(((.((((.((((((((.((.....((((.((((.((.((((......))).).)).)))))))).....)).)))).))))...)))).))).. ( -44.70) >DroSec_CAF1 8463 120 + 1 CGCUCGUUUAUGAAGAACGGCUUCAAGGCGGUCUCCUCCACCUUGAACUGGCUGAGCCACUGGCCCUUCAUGUAGGCGGCGUUGGCCAGCACCAACAUGGUGCGGGAUGUGAUCUCCUGG .(((....(((((((..(((((((((((.((......)).))))))...))))).(((...))).)))))))..)))(((....))).(((((.....)))))((((.......)))).. ( -45.70) >DroSim_CAF1 9148 120 + 1 CGCUCGUUUAUGAAGAACGGCUUCGAGGCGGUCUCCUCCACCUUAAACUGGCUGAGCCACUGGCCCUUCAUGUAGGCGGCGUUGGCCAGCACCAACAUGGUGCGGGAUGUGAUCUCCUGG .((.(((((.....)))))))..(.(((.((((((((.((((........((((.((((.((.((((......))).).)).))))))))........)))).))))...)))).))).) ( -45.29) >DroEre_CAF1 11227 120 + 1 UGCUCGUUUAUGAAAAACGGCUUCAAGGAGGUUUCCUCCACCUUGAACUGGUUGAGCCACUGGCCCUUCAUGUAGGCGGCGUUGCCCAGCACCAACAUGGUACGGGAAUUGAUCUCCUCG .((.(((((.....)))))))....((((((((((((..(((.((.....((((.((.((.(.((((......))).).))).)).)))).....)).)))..))))...)))))))).. ( -35.70) >DroYak_CAF1 8635 120 + 1 UACUCGUUUAUGUAGAAGGGCUUCAAGGAGGUUUCCUCCACCUUGAACUGGCUGAGCCACUGGCCCUUCAUGUAGGCGGCGUUUCCCAGCACCAUCAUGGUGCGGGAAUUGAUCUCUUUG ...((((((((((.((((((((((((((.((......)).))))))..((((...))))..))))))))))))))))))((.(((((.(((((.....)))))))))).))......... ( -52.60) >consensus CGCUCGUUUAUGAAGAACGGCUUCAAGGCGGUCUCCUCCACCUUGAACUGGCUGAGCCACUGGCCCUUCAUGUAGGCGGCGUUGGCCAGCACCAACAUGGUGCGGGAUGUGAUCUCCUCG (((.(((((((...(((.((((((((((.((......)).))))))..((((...))))..)))).)))..))))))))))....((.(((((.....))))).)).............. (-37.86 = -38.14 + 0.28)
Location | 11,033,164 – 11,033,284 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.42 |
Mean single sequence MFE | -43.33 |
Consensus MFE | -35.66 |
Energy contribution | -36.94 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.05 |
Mean z-score | -1.56 |
Structure conservation index | 0.82 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11033164 120 - 27905053 CGAGGAGAUCACACCCCACACCAUGUUGGUGCUGGCCAACGCCGCCUACAUGAAGGGCCAGUGGCUCAGCCAGUUCAAGGUGGAGGAGACCGCCUUGAAGCCAUUCUUCAUUAACGAGCG .((((((..............(((((.((((.((.....)).)))).)))))...(((...((((...)))).((((((((((......))))))))))))).))))))........... ( -41.70) >DroSec_CAF1 8463 120 - 1 CCAGGAGAUCACAUCCCGCACCAUGUUGGUGCUGGCCAACGCCGCCUACAUGAAGGGCCAGUGGCUCAGCCAGUUCAAGGUGGAGGAGACCGCCUUGAAGCCGUUCUUCAUAAACGAGCG (((((.(((...)))))(((((.....))))))))....(((((.....(((((((((...((((...)))).((((((((((......))))))))))...)))))))))...)).))) ( -44.80) >DroSim_CAF1 9148 120 - 1 CCAGGAGAUCACAUCCCGCACCAUGUUGGUGCUGGCCAACGCCGCCUACAUGAAGGGCCAGUGGCUCAGCCAGUUUAAGGUGGAGGAGACCGCCUCGAAGCCGUUCUUCAUAAACGAGCG ....(((.((((..((((((((.....))))).(((....)))...........)))...))))))).((..(((((((((((......)))))).((((.....)))).)))))..)). ( -41.60) >DroEre_CAF1 11227 120 - 1 CGAGGAGAUCAAUUCCCGUACCAUGUUGGUGCUGGGCAACGCCGCCUACAUGAAGGGCCAGUGGCUCAACCAGUUCAAGGUGGAGGAAACCUCCUUGAAGCCGUUUUUCAUAAACGAGCA (((((((.......((((((((.....))))).)))...(.((((((...(((((((((...)))))......)))))))))).).....)))))))..(((((((.....))))).)). ( -43.20) >DroYak_CAF1 8635 120 - 1 CAAAGAGAUCAAUUCCCGCACCAUGAUGGUGCUGGGAAACGCCGCCUACAUGAAGGGCCAGUGGCUCAGCCAGUUCAAGGUGGAGGAAACCUCCUUGAAGCCCUUCUACAUAAACGAGUA ............((((((((((.....))))).)))))..((((.......(((((((...((((...)))).(((((((.((......)).))))))))))))))........)).)). ( -45.36) >consensus CCAGGAGAUCACAUCCCGCACCAUGUUGGUGCUGGCCAACGCCGCCUACAUGAAGGGCCAGUGGCUCAGCCAGUUCAAGGUGGAGGAGACCGCCUUGAAGCCGUUCUUCAUAAACGAGCG ....(((.((((..(((....(((((.((((.((.....)).)))).)))))..)))...)))))))......((((((((((......))))))))))((((((.......)))).)). (-35.66 = -36.94 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:29 2006