Locus 4039

Sequence ID 3R_DroMel_CAF1
Location 11,031,371 – 11,031,466
Length 95
Max. P 0.886921
window6467

overview

Window 7

Location 11,031,371 – 11,031,466
Length 95
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 71.90
Mean single sequence MFE -22.46
Consensus MFE -8.09
Energy contribution -8.20
Covariance contribution 0.11
Combinations/Pair 1.10
Mean z-score -2.20
Structure conservation index 0.36
SVM decision value 0.94
SVM RNA-class probability 0.886921
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11031371 95 - 27905053
CAAUGCAGCUUAAUUUUGGCUGACAUGUCCA---UUUCCACCUGUCAG---UCA-AAAAACUGGUUGUUCAAUAUUUUUUGGAUUCGCCCAAA-AAAAACCCA--------------
....((((((...((((((((((((.((...---.....)).))))))---)))-)))....))))))......((((((((......)))))-)))......-------------- ( -28.10)
>DroPse_CAF1 7138 109 - 1
CAGUGCAGCUU--UUUAAGCUGACAGCCUGAGAGUCUUCCCCUACGAGUAUUCAUAAUAAAUUGUUGUUCAAUAAUU--GGGAUUUUCCCAA----AAACCCGUCUCGUCUCCCACU
((((((((((.--....))))).))..))).(((.........(((((............((((.....))))..((--(((.....)))))----........))))))))..... ( -20.70)
>DroSec_CAF1 6661 94 - 1
CAAUGCAGCUUAAUUUUGGCUGACAUGUCCA---CUUCCUCCUGUCAG---UCA-AAAAACUGGUUGUUCAAUAUUUUGUGGAUUCGCCCAAA--AAAACCCA--------------
....((((((...((((((((((((.(....---......).))))))---)))-)))....))))))......(((((.((.....))))))--).......-------------- ( -23.70)
>DroSim_CAF1 6807 96 - 1
CAAUGCAGCUUAAUUUUGGCUGACAUGUCCA---CUUCCUCCUGUCAG---UCA-AAAAACUGGUUGUUCAAUAUUUUGUGGAUUCGCCCAAAUAAAAACCCA--------------
....((((((...((((((((((((.(....---......).))))))---)))-)))....)))))).......((((.((.....))))))..........-------------- ( -22.50)
>DroEre_CAF1 9512 91 - 1
CAAUGCAGCUUAAUUUAGGCUGACAUGCCCA---CUUCCUUCUGUCGG---UCA-A--AACUGGUUGUUUAAUAUUUUGUGGAUUCGUCCAA---AAAACCCA--------------
....((((((...(((.((((((((......---........))))))---)).-)--))..))))))......((((.((((....)))).---))))....-------------- ( -19.04)
>DroPer_CAF1 7576 109 - 1
CAGUGCAGCUU--UUUAAGCUGACAGCCUGAGAGUCUUCCCCUACGAGUAUUCAUAAUAAAUUGUUGUUCAAUAAUU--GGGAUUUUCCCAA----AAACCCGUCUCGUCUCCCACU
((((((((((.--....))))).))..))).(((.........(((((............((((.....))))..((--(((.....)))))----........))))))))..... ( -20.70)
>consensus
CAAUGCAGCUUAAUUUAGGCUGACAUGCCCA___CUUCCUCCUGUCAG___UCA_AAAAACUGGUUGUUCAAUAUUUUGUGGAUUCGCCCAA___AAAACCCA______________
..((((((((.......))))).)))......................................................((......))........................... ( -8.09 =  -8.20 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:27 2006