Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,028,570 – 11,028,669 |
Length | 99 |
Max. P | 0.934325 |
Location | 11,028,570 – 11,028,669 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 97.98 |
Mean single sequence MFE | -17.42 |
Consensus MFE | -16.24 |
Energy contribution | -16.24 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.56 |
Structure conservation index | 0.93 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11028570 99 - 27905053 AUACAAAAUUCGCAUAAAUAAUCAAAUCUACAAAGUUUCAUUUUGGUUGUUUCCAUUAAGUAAACACGGCUACGUAAACAAAUAUGCGAAUAAGGAUCU .......(((((((((((((((((((...............))))))))))..............(((....))).......)))))))))........ ( -18.16) >DroSec_CAF1 3882 99 - 1 AUACAAAAAUCGCAUAAAUAAUCAAAUCUGCAAAGUUUCAUUUUGGUUGUUUGCAUUAAGUAAACACGGCUACGUAAACAAAUAUGCGAAUAAGGAUGU .........(((((((..............((((((...))))))(((((((((.....))))))(((....))).)))...))))))).......... ( -18.20) >DroSim_CAF1 4018 99 - 1 AUACAAAAAUCGCAUAAAUAAUCAAAUCUGCAAAGUUUCAUUUUGGUUGUUUGCAUUAAGUAAACACGGCUACGUAAACAAAUAUGCGAAUAAGGAUGU .........(((((((..............((((((...))))))(((((((((.....))))))(((....))).)))...))))))).......... ( -18.20) >DroEre_CAF1 6739 99 - 1 AUACAAAAAUCGCAUAAAUAAUCAAAUCUACAAAGUUUCAUUUUGGUUGUUUCCAUUAAGUAAACACGGCUACGUAAACAAAUAUGCGAAUAAGGAUGU .........(((((((((((((((((...............))))))))))..............(((....))).......))))))).......... ( -16.26) >DroYak_CAF1 4072 99 - 1 AUACAAAAAUCGCAUAAAUAAUCAAAUCUACAAAGUUUCAUUUUGGUUGUUUCCAUUAAGUAAACACGGCUACGUAAACAAAUAUGCGAAUAAGGAUGU .........(((((((((((((((((...............))))))))))..............(((....))).......))))))).......... ( -16.26) >consensus AUACAAAAAUCGCAUAAAUAAUCAAAUCUACAAAGUUUCAUUUUGGUUGUUUCCAUUAAGUAAACACGGCUACGUAAACAAAUAUGCGAAUAAGGAUGU .........(((((((((((((((((...............))))))))))..............(((....))).......))))))).......... (-16.24 = -16.24 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:25 2006