Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,015,142 – 11,015,237 |
Length | 95 |
Max. P | 0.528628 |
Location | 11,015,142 – 11,015,237 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 82.31 |
Mean single sequence MFE | -31.07 |
Consensus MFE | -23.65 |
Energy contribution | -24.68 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.29 |
Mean z-score | -1.31 |
Structure conservation index | 0.76 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528628 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11015142 95 + 27905053 AGAACCAAGUCACCGCCAAUGGCAGU-GGCUCCAGUGAUGCACAUGGUACAGGCUAGCACCAGCAAAGGCGACGGCCAACGACCAGGCUCGAAGGA ........(((((.(((...))).))-)))(((..(((.((...((((...((((..(.((......)).)..))))....)))).)))))..))) ( -32.30) >DroSec_CAF1 75865 95 + 1 CGAUCCAAGUCGCCGCCCAUGACAGU-GGCUCCAGUGGUGCACAUGGUACAGGCUAGCACCAGCAAAGGCGACGGCCAACGACCAGGCUCGAAGGA ...(((..((((((((((......).-))).....((((((...((((....)))))))))).....))))))((((........))))....))) ( -34.60) >DroSim_CAF1 85512 95 + 1 CGAUCCAAGUCGCCGCCCAUGACAGU-GGCUCCAGUGGUGCACAUGGUACAGGCUAGCACCAGCAAAGGCGACAGCCAACGACCCGGCUCGAAGGA ...(((..((((((((((......).-))).....((((((...((((....)))))))))).....))))))((((........))))....))) ( -34.60) >DroEre_CAF1 78197 95 + 1 CGUUCCAAGUCGCCGCCAAUGACAGU-GGCCCCAGUGGUACAAAUGGUUCAGGCCAGUACCAGCAAAGGCGACAGCCAACGACCAGGUUCGAAGGA ...(((..((((((((((.......)-))).....((((((...((((....)))))))))).....))))))((((........))))....))) ( -32.90) >DroYak_CAF1 85907 95 + 1 CGAUCCAAGUCGCCGCCAAUGUCAGU-GGCUCCAGUGGUGCACAUGGUUCAGGCCAGCACCAGCAAAGGCGACAGCCAAAGACCAGGCUCGAAGGA ...(((..((((((((((.......)-))).....((((((...((((....)))))))))).....))))))((((........))))....))) ( -37.80) >DroAna_CAF1 106533 92 + 1 CGCUCCAAAUCGCCACCCC----AAUCCACACAAUCGAUGCAAGUGGUCCAGGCUAGUACCAGUAAUAGUGGCAAUAAUCGACCCAGCUCCAAGGA ...(((.....(((((...----...((((.............))))....((......)).......))))).......((......))...))) ( -14.22) >consensus CGAUCCAAGUCGCCGCCAAUGACAGU_GGCUCCAGUGGUGCACAUGGUACAGGCUAGCACCAGCAAAGGCGACAGCCAACGACCAGGCUCGAAGGA ...(((..(((((((((.((....)).))).....((((((...((((....)))))))))).....))))))((((........))))....))) (-23.65 = -24.68 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:16 2006