Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,014,399 – 11,014,497 |
Length | 98 |
Max. P | 0.766957 |
Location | 11,014,399 – 11,014,497 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -36.66 |
Consensus MFE | -31.50 |
Energy contribution | -31.66 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.11 |
Mean z-score | -1.45 |
Structure conservation index | 0.86 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766957 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11014399 98 + 27905053 GCAUUUCCGGUUUGGCACUAACAGCCGCUGCAGCGGCCCACAUGUCGCUACAUCACCAGGCGGUGGUGGCGGAGGCAUUAACUGGAGCUUCAGUUGAA ((...(((((((((.......))(((.((((((((((......)))))).(((((((....))))))))))).)))...))))))))).......... ( -38.30) >DroSec_CAF1 75124 98 + 1 GCAUUUCCGGUUUGGUACUAACAGCCGCUGCAGCGGCUCACAUGUCGCUACAUCACCAGGCUGUGGUGGCGGAGGCAUUAACUGGACCUUCAGUUGAA ........((((..((..(((..(((.((((((((((......)))))).((((((......)))))))))).))).)))))..)))).......... ( -35.80) >DroSim_CAF1 84771 98 + 1 GCAUUUCCGGUUUGGUACUAACAGCCGCUGCAGCGGAUCACAUGUCGCUACAUCACCAGGCUGUGGUGGCGGAGGCAUUAACUGGAGCUUCAGUUGAA ((...((((((.....)))....(((((..((((((.....((((....))))..))..))))..)))))))).)).((((((((....)))))))). ( -32.70) >DroEre_CAF1 77438 98 + 1 GCAUUUCCGGUUUGGUACUAACUGCCGCUGCAGCGGCACACAUGUCCUUGCACCACCAGACGGUGGUGGCGGAGGCAUUAACCGGAGGUUCAUCUGAA (.((((((((((..........((((((....))))))...(((((..(((((((((....)))))).)))..))))).)))))))))).)....... ( -42.30) >DroYak_CAF1 85144 98 + 1 GCAUGUCCGGUUUGGUACUUACUGCCACUGCUGCGGCUCACAUGUCCUUGCACCACCAGGCCGUGGUGGCGGAGGCAUUAACUGGAGGUUCAGGUGAA (.((.(((((((.(((.(((.((((((((...((((((....(((....)))......))))))))))))))))).)))))))))).)).)....... ( -34.20) >consensus GCAUUUCCGGUUUGGUACUAACAGCCGCUGCAGCGGCUCACAUGUCGCUACAUCACCAGGCGGUGGUGGCGGAGGCAUUAACUGGAGCUUCAGUUGAA .....(((((((.(.......).(((.((((((((((......)))))).((((((......)))))))))).)))...)))))))............ (-31.50 = -31.66 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:15 2006