Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,494,409 – 1,494,526 |
Length | 117 |
Max. P | 0.657618 |
Location | 1,494,409 – 1,494,526 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.91 |
Mean single sequence MFE | -37.20 |
Consensus MFE | -25.75 |
Energy contribution | -26.12 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.35 |
Mean z-score | -1.50 |
Structure conservation index | 0.69 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584777 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1494409 117 + 27905053 UUAGAUACGGAUUUGCCGGACUUGAUCGU---CGGCAGCGACACGGAGAUUUGCAUUUUGGCCAGCGGCUUGAGGUACAAGCUGUGCGGCAAGUAAAAAGGAAUGCAGUCUGCCACAUUU ........(...((((((.((......))---))))))...)..(((((((.(((((((.(((.((((((((.....))))))))..))).........)))))))))))).))...... ( -38.30) >DroVir_CAF1 3532 120 + 1 UUGGAAACGGAUUUUCCGGUUUUGAUUUUUUCGGGCAAUGCAACUGAUAUUUGCAUUUUUGCCAACGGCUUGAGGUACAAACUGUGCGGCAGAUACAGCGGCGUGCAGUCCGCAACAUUU (..(((.(((.....))).)))..)......(((((.((((..(((.(((((((.(((..(((...)))..)))((((.....)))).))))))))))..))))...)))))........ ( -37.40) >DroGri_CAF1 3341 120 + 1 UUUGAUACGGAUUUGCCGGUUUUGAUUUUUUCGGGCAAUGCAACUGAUAUUUGCAUUUUGGCCAACGGCUUGAGGUACAAGCUGUGCGGCAAAUAGAGCGGCGUGCAAUCCGCCACAUUU ..........((((((((..............((.((((((((.......))))))..)).)).((((((((.....)))))))).))))))))...(.((((.......)))).).... ( -37.90) >DroWil_CAF1 2997 117 + 1 UUUGAAACAGAUUUGCCAGACUUAAUUGU---CGGCAAUGCAACGGAGAUUUGCAUUUUAGCCAAUGGCUUAAGAUAUAGGCUGUGAGGCAGAUACAGCGGAGUGCAGUCUGACACAUUU .......((((((((((.(((......))---))))))((((.((...((((((....(((((.(((........))).)))))....))))))....))...)))))))))........ ( -35.20) >DroMoj_CAF1 3145 120 + 1 UUUGAUACGGAUUUGCCGGUUUUGAUUUUUUCGGGCAAUGCAACUGAUAUUUGCAUUUUUGCCAAAGGCUUGAGGUACAAGCUGUGCGGCAAAUAAAGCGGUGUGCAGUCCGCAACAUUU ..........((((((((...............((((((((((.......))))))...))))...((((((.....))))))...))))))))...((((........))))....... ( -35.30) >DroAna_CAF1 2928 117 + 1 UUGGAUACGGAUUUGCCGGAUUUAAUAGG---CGGCAGCGAGACGGAGAUUUGCAUUUUUGCCACAGGCUUGAGAUACAAGCUGUGCGGCAGGUACAGUGGCGUGCAGUCCGUGACAUUU .....((((((((((((..........))---))((((((((.......)))))......(((((.((((((.....))))))((((.....)))).))))).)))))))))))...... ( -39.10) >consensus UUUGAUACGGAUUUGCCGGAUUUGAUUGU___CGGCAAUGCAACGGAGAUUUGCAUUUUUGCCAACGGCUUGAGGUACAAGCUGUGCGGCAAAUACAGCGGCGUGCAGUCCGCCACAUUU .......(((((((((((...............((((((((((.......)))))))...))).((((((((.....)))))))).)))))).....((.....)).)))))........ (-25.75 = -26.12 + 0.37)
Location | 1,494,409 – 1,494,526 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.91 |
Mean single sequence MFE | -30.97 |
Consensus MFE | -19.11 |
Energy contribution | -20.17 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.22 |
Mean z-score | -2.07 |
Structure conservation index | 0.62 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657618 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1494409 117 - 27905053 AAAUGUGGCAGACUGCAUUCCUUUUUACUUGCCGCACAGCUUGUACCUCAAGCCGCUGGCCAAAAUGCAAAUCUCCGUGUCGCUGCCG---ACGAUCAAGUCCGGCAAAUCCGUAUCUAA ..(..(((.(((.((((((...........(((((...(((((.....))))).)).)))...))))))..))))))..)...(((((---((......)).)))))............. ( -28.64) >DroVir_CAF1 3532 120 - 1 AAAUGUUGCGGACUGCACGCCGCUGUAUCUGCCGCACAGUUUGUACCUCAAGCCGUUGGCAAAAAUGCAAAUAUCAGUUGCAUUGCCCGAAAAAAUCAAAACCGGAAAAUCCGUUUCCAA ..(((..((((........))))..))).(((((.((.(((((.....))))).)))))))..(((((((.......)))))))...................(((((.....))))).. ( -27.70) >DroGri_CAF1 3341 120 - 1 AAAUGUGGCGGAUUGCACGCCGCUCUAUUUGCCGCACAGCUUGUACCUCAAGCCGUUGGCCAAAAUGCAAAUAUCAGUUGCAUUGCCCGAAAAAAUCAAAACCGGCAAAUCCGUAUCAAA ....((((((.......))))))...((((((((.((.(((((.....))))).)).(((...(((((((.......))))))))))...............)))))))).......... ( -35.50) >DroWil_CAF1 2997 117 - 1 AAAUGUGUCAGACUGCACUCCGCUGUAUCUGCCUCACAGCCUAUAUCUUAAGCCAUUGGCUAAAAUGCAAAUCUCCGUUGCAUUGCCG---ACAAUUAAGUCUGGCAAAUCUGUUUCAAA .....(((((((((.......(((((.........)))))...............(((((...(((((((.......)))))))))))---)......)))))))))............. ( -29.10) >DroMoj_CAF1 3145 120 - 1 AAAUGUUGCGGACUGCACACCGCUUUAUUUGCCGCACAGCUUGUACCUCAAGCCUUUGGCAAAAAUGCAAAUAUCAGUUGCAUUGCCCGAAAAAAUCAAAACCGGCAAAUCCGUAUCAAA ...((.((((((..((.....))....(((((((....(((((.....))))).(((((....(((((((.......)))))))..)))))...........))))))))))))).)).. ( -34.00) >DroAna_CAF1 2928 117 - 1 AAAUGUCACGGACUGCACGCCACUGUACCUGCCGCACAGCUUGUAUCUCAAGCCUGUGGCAAAAAUGCAAAUCUCCGUCUCGCUGCCG---CCUAUUAAAUCCGGCAAAUCCGUAUCCAA .......(((((..(((((....((((..(((((((..(((((.....))))).)))))))....))))......)))...))(((((---...........)))))..)))))...... ( -30.90) >consensus AAAUGUGGCGGACUGCACGCCGCUGUAUCUGCCGCACAGCUUGUACCUCAAGCCGUUGGCAAAAAUGCAAAUAUCAGUUGCAUUGCCC___AAAAUCAAAACCGGCAAAUCCGUAUCAAA .......(((((..((.....))......(((((....(((((.....)))))....(((...(((((((.......))))))))))...............)))))..)))))...... (-19.11 = -20.17 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:20 2006