Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,004,740 – 11,004,867 |
Length | 127 |
Max. P | 0.976509 |
Location | 11,004,740 – 11,004,832 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 80.52 |
Mean single sequence MFE | -27.20 |
Consensus MFE | -24.90 |
Energy contribution | -25.07 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.92 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.850154 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11004740 92 + 27905053 C--------UUAU--------------UUAGUGA--AUGCUUACCCUUCAGGGACCUGAUGUAGGACUGCCAGAAUUUCGCCUUCUUGCUGGGGCUCUCAUUGCGCCCAAUCAUUU .--------....--------------..(((((--...(((((...((((....)))).))))).(.((.((((.......)))).)).)((((.(.....).))))..))))). ( -22.20) >DroVir_CAF1 107479 111 + 1 C---AUAUGUUAUAGGAAUUGUGAUAUGAUAUUU--AUGCUUACCCUUCAGGGAUCUGAUGUAGGAUUGCCAGAAUUUGGCCUUCUUGCUGGGGCUCUCGUUGCGCCCAAUCAUUU .---.((((((((((...))))))))))......--.......(((....)))...((((((((((..(((((...)))))..))))))..((((.(.....).)))).))))... ( -30.30) >DroGri_CAF1 80008 97 + 1 G---GUAUAUUAU--------------GUGGUUA--UUGCUUACCCUUCAGGGAUCUGAUGUAGGAUUGCCAGAAUUUGGCCUUCUUGCUGGGGCUCUCAUUGCGCCCAAUCAUUU .---.........--------------((((((.--.......(((....))).......((((((..(((((...)))))..))))))..((((.(.....).)))))))))).. ( -27.00) >DroWil_CAF1 75228 102 + 1 GUAGUAUUGUUAU--------------UUGAUUUUUAAACUUACCCUUCAGGGAUCUGAUGUAGGAUUGCCAGAAUUUGGCCUUCUUGCUGGGGCUCUCAUUGCGCCCAAUCAUUU .............--------------................(((....)))...((((((((((..(((((...)))))..))))))..((((.(.....).)))).))))... ( -26.10) >DroMoj_CAF1 89367 95 + 1 C---AUAUAUCAU----------------UCAGU--ACACUUACCCUUCAGGGAUCUGAUGUAGGAUUGCCAGAAUUUGGCCUUCUUGCUGGGGCUCUCAUUGCGCCCAAUCAUUU .---.........----------------.....--.......(((....)))...((((((((((..(((((...)))))..))))))..((((.(.....).)))).))))... ( -26.10) >DroAna_CAF1 89893 92 + 1 A--------UUGU--------------UGGGGCU--UUACUUACCCUUCAGGGACCUGAUGUAGGAUUGCCAGAACUUGGCCUUCUUGCUGGGGCUCUCGUUGCGCCCAAUCAUUU .--------.((.--------------..((((.--.......(((.((((....)))).((((((..(((((...)))))..)))))).)))((.......))))))...))... ( -31.50) >consensus C____UAU_UUAU______________UUGGUUU__AUACUUACCCUUCAGGGAUCUGAUGUAGGAUUGCCAGAAUUUGGCCUUCUUGCUGGGGCUCUCAUUGCGCCCAAUCAUUU ...........................................(((....)))...((((((((((..(((((...)))))..))))))..((((.(.....).)))).))))... (-24.90 = -25.07 + 0.17)
Location | 11,004,740 – 11,004,832 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 80.52 |
Mean single sequence MFE | -23.49 |
Consensus MFE | -20.89 |
Energy contribution | -20.67 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.10 |
Mean z-score | -1.41 |
Structure conservation index | 0.89 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760574 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11004740 92 - 27905053 AAAUGAUUGGGCGCAAUGAGAGCCCCAGCAAGAAGGCGAAAUUCUGGCAGUCCUACAUCAGGUCCCUGAAGGGUAAGCAU--UCACUAA--------------AUAA--------G ...((.(((((.((.......))))))))).(((.((...(((((..(((.(((.....)))...))).)))))..)).)--)).....--------------....--------. ( -21.40) >DroVir_CAF1 107479 111 - 1 AAAUGAUUGGGCGCAACGAGAGCCCCAGCAAGAAGGCCAAAUUCUGGCAAUCCUACAUCAGAUCCCUGAAGGGUAAGCAU--AAAUAUCAUAUCACAAUUCCUAUAACAUAU---G ..(((((((((.((.......))))))((......((((.....)))).(((((...((((....)))))))))..))..--....))))).....................---. ( -25.20) >DroGri_CAF1 80008 97 - 1 AAAUGAUUGGGCGCAAUGAGAGCCCCAGCAAGAAGGCCAAAUUCUGGCAAUCCUACAUCAGAUCCCUGAAGGGUAAGCAA--UAACCAC--------------AUAAUAUAC---C ..(((..((((.((.......))))))((......((((.....)))).(((((...((((....)))))))))..))..--......)--------------)).......---. ( -23.50) >DroWil_CAF1 75228 102 - 1 AAAUGAUUGGGCGCAAUGAGAGCCCCAGCAAGAAGGCCAAAUUCUGGCAAUCCUACAUCAGAUCCCUGAAGGGUAAGUUUAAAAAUCAA--------------AUAACAAUACUAC ...(((((((((.(.....).)))).(((......((((.....)))).(((((...((((....)))))))))..)))....))))).--------------............. ( -22.60) >DroMoj_CAF1 89367 95 - 1 AAAUGAUUGGGCGCAAUGAGAGCCCCAGCAAGAAGGCCAAAUUCUGGCAAUCCUACAUCAGAUCCCUGAAGGGUAAGUGU--ACUGA----------------AUGAUAUAU---G ...((.(((((.((.......))))))))).....((((.....)))).(((((...((((....)))))))))..((((--((...----------------..).)))))---. ( -22.10) >DroAna_CAF1 89893 92 - 1 AAAUGAUUGGGCGCAACGAGAGCCCCAGCAAGAAGGCCAAGUUCUGGCAAUCCUACAUCAGGUCCCUGAAGGGUAAGUAA--AGCCCCA--------------ACAA--------U ...((.(((((.((.......((((......((..((((.....))))..)).....((((....)))).))))......--.))))))--------------))).--------. ( -26.14) >consensus AAAUGAUUGGGCGCAAUGAGAGCCCCAGCAAGAAGGCCAAAUUCUGGCAAUCCUACAUCAGAUCCCUGAAGGGUAAGCAU__AAACCAA______________AUAA_AUA____G .......((((.((.......))))))((......((((.....)))).(((((...((((....)))))))))..))...................................... (-20.89 = -20.67 + -0.22)
Location | 11,004,752 – 11,004,867 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.32 |
Mean single sequence MFE | -29.85 |
Consensus MFE | -28.53 |
Energy contribution | -28.37 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.12 |
Mean z-score | -1.47 |
Structure conservation index | 0.96 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976509 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11004752 115 + 27905053 AUGCUUACCCUUCAGGGACCUGAUGUAGGACUGCCAGAAUUUCGCCUUCUUGCUGGGGCUCUCAUUGCGCCCAAUCAUUUCCAAGUGGUUUUUGAACAUUUUGAUCGAUUUGUUU----- ......((((((...(((..((((((((((..((.........))..))))))..((((.(.....).)))).))))..)))))).)))....(((((..((....))..)))))----- ( -25.60) >DroPse_CAF1 81896 120 + 1 UUACUUACCCUUCAGGGAUCUAAUGUAAGACUGCCAGAACUUGGCCUUCUUGCUGGGGCUCUCAUUGCGCCCAAUCAUUUCCAAAUGGUUCUUGAACAUUUUGAUCGAUUUGUUUCUGUU ..........((((((((((....((((((..(((((...)))))..))))))..((((.(.....).))))..............))))))))))........................ ( -30.10) >DroWil_CAF1 75250 115 + 1 AAACUUACCCUUCAGGGAUCUGAUGUAGGAUUGCCAGAAUUUGGCCUUCUUGCUGGGGCUCUCAUUGCGCCCAAUCAUUUCCAAAUGGCUCUUGAACAUUUUGAUCGAUUUGUUU----- ........((.....(((..((((((((((..(((((...)))))..))))))..((((.(.....).)))).))))..)))....)).....(((((..((....))..)))))----- ( -31.30) >DroMoj_CAF1 89382 115 + 1 ACACUUACCCUUCAGGGAUCUGAUGUAGGAUUGCCAGAAUUUGGCCUUCUUGCUGGGGCUCUCAUUGCGCCCAAUCAUUUCCAAAUGGUUUUUGAACAUUUUGAUCGAUUUGUUU----- .((...(((......(((..((((((((((..(((((...)))))..))))))..((((.(.....).)))).))))..)))....)))...))((((..((....))..)))).----- ( -31.50) >DroAna_CAF1 89905 115 + 1 UUACUUACCCUUCAGGGACCUGAUGUAGGAUUGCCAGAACUUGGCCUUCUUGCUGGGGCUCUCGUUGCGCCCAAUCAUUUCCAAAUGGCUCUUGAACAUUUUGAUCGAUUUGUUU----- ........((.....(((..((((((((((..(((((...)))))..))))))..((((.(.....).)))).))))..)))....)).....(((((..((....))..)))))----- ( -30.50) >DroPer_CAF1 79699 120 + 1 UUACUUACCCUUCAGGGAUCUAAUGUAAGACUGCCAGAACUUGGCCUUCUUGCUGGGGCUCUCAUUGCGCCCAAUCAUUUCCAAAUGGUUCUUGAACAUUUUGAUCGAUUUGUUUCUGUU ..........((((((((((....((((((..(((((...)))))..))))))..((((.(.....).))))..............))))))))))........................ ( -30.10) >consensus AUACUUACCCUUCAGGGAUCUGAUGUAGGACUGCCAGAACUUGGCCUUCUUGCUGGGGCUCUCAUUGCGCCCAAUCAUUUCCAAAUGGUUCUUGAACAUUUUGAUCGAUUUGUUU_____ ..........((((((((((....((((((..(((((...)))))..))))))..((((.(.....).))))..............))))))))))........................ (-28.53 = -28.37 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:12 2006