Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,995,937 – 10,996,064 |
Length | 127 |
Max. P | 0.884814 |
Location | 10,995,937 – 10,996,040 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 89.00 |
Mean single sequence MFE | -40.98 |
Consensus MFE | -30.38 |
Energy contribution | -29.66 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.17 |
Mean z-score | -2.26 |
Structure conservation index | 0.74 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884814 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10995937 103 - 27905053 UCUGGGAAAACCCAGAGGGAGCGGGAAACAUUAUUGG-------GGAAAAAUUCGCUGGCCUAGCGGGAGCCUGUCAAGUUCCUGGCCUAUGAAACACGCUUCAUUGUGU ((((((....)))))).(((((((....)........-------.......((((..((((....((((((.......))))))))))..))))...))))))....... ( -36.40) >DroSec_CAF1 56679 110 - 1 GCUGGGAAAACCCAGAGGGAGCGGGAAAAAUCAUUGGGGGAGGGGGAAAUAUUCACUGGCCUGGCGGGAGCCUGUCAAGUUCCUGGCCUAUGAAACACGCUUCAUUGUGU .(((((....)))))..((((((.......((((.(((..(((((((.....))..((((..(((....))).))))..)))))..)))))))....))))))....... ( -35.50) >DroSim_CAF1 65672 110 - 1 GCUGGGAAAACCCAGAGGGAGUGGAAAAAAUCAUUGGGGGAGGGGGAAAUAUUCGCUGGCCUGGCGGGAGCCUGUCAAGUUCCUGGCCUAUGAAACACGCUUCAUUGUGU .(((((....)))))..((((((.......((((.(((((..((.((.....)).))..)))..(((((((.......))))))).)).))))....))))))....... ( -34.80) >DroEre_CAF1 58948 109 - 1 GCUGGGAAAACCCGGAGGGAGCGGGAAAAU-UCAUGGGGGCUGGGGAAAUAUUCCCUGGCCUGGCGGGAGCCUGUCAAGCUCCUGGCCUAUGAAACACGCUUCAUUGUGU .(((((....)))))..((((((......(-((((((((((..((((.....))))..)))...(((((((.......))))))).))))))))...))))))....... ( -52.70) >DroYak_CAF1 66415 110 - 1 GCUGGGAAAACCCAGAGGAAGCGGGAAAAUUUCAUGGGGACUGGGGAAAUAUUCCCUGGCCUGGUGGGAGCCUGUCAAGCUCCUGGCCUAUGGAACACGCUUCAUUGUGU .(((((....)))))..((((((......((((((((((.(..((((.....))))..))).(.(((((((.......))))))).)))))))))..))))))....... ( -45.50) >consensus GCUGGGAAAACCCAGAGGGAGCGGGAAAAAUUAUUGGGGGAGGGGGAAAUAUUCCCUGGCCUGGCGGGAGCCUGUCAAGUUCCUGGCCUAUGAAACACGCUUCAUUGUGU .(((((....)))))..((((((.....................(((....)))...((((....((((((.......)))))))))).........))))))....... (-30.38 = -29.66 + -0.72)
Location | 10,995,969 – 10,996,064 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 86.27 |
Mean single sequence MFE | -25.44 |
Consensus MFE | -18.04 |
Energy contribution | -18.48 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.73 |
Structure conservation index | 0.71 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10995969 95 + 27905053 UUGACAGGCUCCCGCUAGGCCAGCGAAUUUUUCC-------CCAAUAAUGUUUCCCGCUCCCUCUGGGUUUUCCCAGACCUCUGCAAACUUGGCCAAAAGCC ......((((.......((((((((.........-------..............)))....((((((....))))))............)))))...)))) ( -22.30) >DroSec_CAF1 56711 102 + 1 UUGACAGGCUCCCGCCAGGCCAGUGAAUAUUUCCCCCUCCCCCAAUGAUUUUUCCCGCUCCCUCUGGGUUUUCCCAGCCCUGUGCAAACUUGGCCAAAAGCC ......(((....))).(((((((......................((....))..((.(...(((((....)))))....).))..)).)))))....... ( -23.20) >DroSim_CAF1 65704 102 + 1 UUGACAGGCUCCCGCCAGGCCAGCGAAUAUUUCCCCCUCCCCCAAUGAUUUUUUCCACUCCCUCUGGGUUUUCCCAGCCCUGUGCAAACUUGGCCAAAAGCC ......(((....))).((((((.(((.(..((.............))..).)))(((.....(((((....)))))....))).....))))))....... ( -22.72) >DroEre_CAF1 58980 101 + 1 UUGACAGGCUCCCGCCAGGCCAGGGAAUAUUUCCCCAGCCCCCAUGA-AUUUUCCCGCUCCCUCCGGGUUUUCCCAGCGCUUCGCUAACUUGGCCAAAAGCC ......((((...(((((((..((((.....))))..))).....((-(....((((.......))))..)))..((((...))))....))))....)))) ( -28.50) >DroYak_CAF1 66447 102 + 1 UUGACAGGCUCCCACCAGGCCAGGGAAUAUUUCCCCAGUCCCCAUGAAAUUUUCCCGCUUCCUCUGGGUUUUCCCAGCUCUCCGCAAACUUGGCCAACAGCC ......((((.......((((((((((.(((((............))))).)))))((.....(((((....)))))......)).....)))))...)))) ( -30.50) >consensus UUGACAGGCUCCCGCCAGGCCAGCGAAUAUUUCCCCAGCCCCCAAUAAUUUUUCCCGCUCCCUCUGGGUUUUCCCAGCCCUCUGCAAACUUGGCCAAAAGCC ......(((....))).((((((.((.....)).......................((.....(((((....)))))......))....))))))....... (-18.04 = -18.48 + 0.44)
Location | 10,995,969 – 10,996,064 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 86.27 |
Mean single sequence MFE | -34.78 |
Consensus MFE | -24.66 |
Energy contribution | -24.42 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.17 |
Mean z-score | -1.74 |
Structure conservation index | 0.71 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10995969 95 - 27905053 GGCUUUUGGCCAAGUUUGCAGAGGUCUGGGAAAACCCAGAGGGAGCGGGAAACAUUAUUGG-------GGAAAAAUUCGCUGGCCUAGCGGGAGCCUGUCAA (((((((((((..((((.(.....((((((....))))))).)))).(....)......((-------.((.....)).))))))....)))))))...... ( -29.20) >DroSec_CAF1 56711 102 - 1 GGCUUUUGGCCAAGUUUGCACAGGGCUGGGAAAACCCAGAGGGAGCGGGAAAAAUCAUUGGGGGAGGGGGAAAUAUUCACUGGCCUGGCGGGAGCCUGUCAA ((((((((.((...(((((.(....(((((....)))))...).)))))............(((..(((((....))).))..)))))))))))))...... ( -30.40) >DroSim_CAF1 65704 102 - 1 GGCUUUUGGCCAAGUUUGCACAGGGCUGGGAAAACCCAGAGGGAGUGGAAAAAAUCAUUGGGGGAGGGGGAAAUAUUCGCUGGCCUGGCGGGAGCCUGUCAA ((((((((.((((.(((.(((....(((((....))))).....))).)))......))))(((..((.((.....)).))..)))..))))))))...... ( -32.90) >DroEre_CAF1 58980 101 - 1 GGCUUUUGGCCAAGUUAGCGAAGCGCUGGGAAAACCCGGAGGGAGCGGGAAAAU-UCAUGGGGGCUGGGGAAAUAUUCCCUGGCCUGGCGGGAGCCUGUCAA ((((((((.(((..((((((...)))))).....((((.......)))).....-...)))((((..((((.....))))..))))..))))))))...... ( -41.10) >DroYak_CAF1 66447 102 - 1 GGCUGUUGGCCAAGUUUGCGGAGAGCUGGGAAAACCCAGAGGAAGCGGGAAAAUUUCAUGGGGACUGGGGAAAUAUUCCCUGGCCUGGUGGGAGCCUGUCAA ((((.((.((.......)).)).))))(((....))).......(((((....(..(((.(((.(..((((.....))))..)))).)))..).)))))... ( -40.30) >consensus GGCUUUUGGCCAAGUUUGCACAGGGCUGGGAAAACCCAGAGGGAGCGGGAAAAAUUAUUGGGGGAGGGGGAAAUAUUCCCUGGCCUGGCGGGAGCCUGUCAA (((....(((((..(((((......(((((....))))).....)))))...................(((....)))..))))).(((....))).))).. (-24.66 = -24.42 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:04 2006