Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,982,051 – 10,982,144 |
Length | 93 |
Max. P | 0.702717 |
Location | 10,982,051 – 10,982,144 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 82.57 |
Mean single sequence MFE | -15.57 |
Consensus MFE | -9.54 |
Energy contribution | -9.10 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -2.02 |
Structure conservation index | 0.61 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.702717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10982051 93 - 27905053 ACU-ACAACGCACUGCAAUCUGAAGCUAAGUUAGUUUUCAUUUUUAUAAUGAGAUAUUUACUCUUUUAGUUCAGUUUUCUAUAGUUUUUUUUUU (((-(....((...))...(((((.(((((..((((((((((.....))))))).....)))..)))))))))).......))))......... ( -13.60) >DroSec_CAF1 47662 85 - 1 ACU-ACAACGCACUGCAAUCUGAAGCUAAGUUAGUUUUCAUUUUUAUAAUGAGAUAUUUGC----UUAGUUUAGUUAUUU----UUCAGUUUUU ...-.......((((.((.(((((.((((((.((((((((((.....))))))).))).))----))))))))).....)----).)))).... ( -16.40) >DroSim_CAF1 56660 85 - 1 ACU-ACAACGCACUGCAAUCUGAAGCUAAGUUAGUUUUCAUUUUUAUAAUGAGAUAUUUGC----UUAGUUUAGUUUUUU----UUCAGUUUUU ...-.......((((.((.(((((.((((((.((((((((((.....))))))).))).))----))))))))).....)----).)))).... ( -16.40) >DroYak_CAF1 57381 80 - 1 ACUCGCAACGCACUGCAAUCUGAAUCUAAGUUAGUUUUCAUUUUAAUAAUGAGAUAUUUGCUCUUUUAGUUCAGUUCUCC-------------- ....(((......)))...(((((.(((((..((((((((((.....))))))).....)))..))))))))))......-------------- ( -15.90) >consensus ACU_ACAACGCACUGCAAUCUGAAGCUAAGUUAGUUUUCAUUUUUAUAAUGAGAUAUUUGC____UUAGUUCAGUUUUCU____UUCAGUUUUU ...................(((((.((((((.((((((((((.....))))))).))).))....))))))))).................... ( -9.54 = -9.10 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:02 2006