Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,981,679 – 10,981,771 |
Length | 92 |
Max. P | 0.915718 |
Location | 10,981,679 – 10,981,771 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 76.46 |
Mean single sequence MFE | -34.54 |
Consensus MFE | -9.60 |
Energy contribution | -10.36 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.32 |
Mean z-score | -3.13 |
Structure conservation index | 0.28 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915718 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10981679 92 - 27905053 GCCUCGACAUUGCCACUUUUCCUGUUUGCCUCGCCAUCUUUC----------UGGUUAACAGGUGUACACGGACAAAGUG----GAAAAACAGA----GGAAUACUGCGG .((((.......(((((((((((((.(((((.((((......----------))))....))))).))).))).))))))----).......))----)).......... ( -29.34) >DroSec_CAF1 47290 92 - 1 GCCUCGACAUUGCCACUUUUCCUGUUUGCCUCUCCAUCCUUC----------UGGUUAACAGGUGCACACGGGCAAAGUG----GAAAAACAGA----GGAAUACUGCGG .((((.......(((((((.(((((.(((.(((....((...----------.)).....))).))).))))).))))))----).......))----)).......... ( -30.94) >DroSim_CAF1 56288 92 - 1 GCCUCGACAUUUCCACUUUUCCUGUUUGCCUCUCCAUCCUUC----------UGGUUAACAGGUGCACACGGGCAAAGUG----GAAAAACAGA----GGAAUACUGCGG .((((....((((((((((.(((((.(((.(((....((...----------.)).....))).))).))))).))))))----))))....))----)).......... ( -33.90) >DroEre_CAF1 49443 92 - 1 GCCUCGACAUUGCCACUUUUCCCGUUCACCUCUCCAUCUUUC----------UGGUUAACAGGUGCACACGGGGAAAGUG----GAAAAACAGA----GGCAUACUGCGG (((((.......(((((((((((((.(((((..(((......----------))).....)))))...))))))))))))----).......))----)))......... ( -40.64) >DroYak_CAF1 57012 92 - 1 GCCUCGACAUUGCCACUUUUCCCAUUUCCCUCCUCACCUUUC----------UGGUUAACAGGUGCUCACGGGGAAAGUG----GAAAAACAGA----GGCAUACUGCGG (((((.......(((((((((((....((((....(((....----------.)))....))).).....))))))))))----).......))----)))......... ( -33.34) >DroAna_CAF1 71975 106 - 1 AUCUCGUUCGUGCCUCUUUUCCUGCCCGGCUGUCUGUCCUUCUUCCGUUCUGUGUGUAACAGGUGCGGUUG--AAGAGUGACAGGUGAAAGGGAGAAAGGCCUUC--CAU .........(.((((.(((((((...((.(((((.(..((((..(((((((((.....))))).))))..)--)))..)))))).))..))))))).)))))...--... ( -39.10) >consensus GCCUCGACAUUGCCACUUUUCCUGUUUGCCUCUCCAUCCUUC__________UGGUUAACAGGUGCACACGGGCAAAGUG____GAAAAACAGA____GGAAUACUGCGG .............((((((.(((((.(((((....(((...............)))....)))))...))))).)))))).............................. ( -9.60 = -10.36 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:01 2006