| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,980,792 – 10,980,886 |
| Length | 94 |
| Max. P | 0.907479 |
| Location | 10,980,792 – 10,980,886 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 74.45 |
| Mean single sequence MFE | -18.01 |
| Consensus MFE | -5.56 |
| Energy contribution | -6.52 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.31 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.907479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10980792 94 + 27905053 UUCCUCAGUUUUCCCAUCUUGGUUUCUCC---GCUCCACAGAUGUCAUCCACCGCCUUUGCUUUGCCAGCUGGACUGCAGCAUAUCUC-AUUCACAUU ...((((((.....((((((((.......---...))).)))))..........((...(((.....))).)))))).))........-......... ( -12.60) >DroPse_CAF1 60603 79 + 1 UUU------UUUUCGAUUUCGGUUCUUGCGGUGGUCCACAGCUGUCAUCCC-------------CCCAGCUGGACUGCAGCAUAUCUGUGCUCUAAUU ...------.....((...(((....(((.(..(((((..((((.......-------------..)))))))))..).)))...)))...))..... ( -21.80) >DroSec_CAF1 46449 94 + 1 UUUCUCGGUUUUCCCAUCUUGGUUUCUGC---CCUCCACAGAUGUCAUCCUCCGCCUCUGCUUUCCCAGCUGGACUGCAGCAUAUCUC-AUUCUAAUU .....(((......((((((((.......---...))).))))).......)))...((((..(((.....)))..))))........-......... ( -16.92) >DroSim_CAF1 55423 94 + 1 UUCCUCGGUUUUCCCAUCUUGGUUUCUGC---CCUCCACAGAUGUCAUCCUCCGCCUCUGCUUUCCCAGCUGGACUGCAGCAUAUCUC-AUUCUAAUU .....(((......((((((((.......---...))).))))).......)))...((((..(((.....)))..))))........-......... ( -16.92) >DroPer_CAF1 56688 81 + 1 UUUU----UUUUUCGAUUUCGGUUCUUGCGGUGGUCCACAGCUGUCAUCCC-------------CCCAGCUGGACUGCAGCAUAUCUGUGCUCUAAUU ....----......((...(((....(((.(..(((((..((((.......-------------..)))))))))..).)))...)))...))..... ( -21.80) >consensus UUUCUC_GUUUUCCCAUCUUGGUUUCUGC___GCUCCACAGAUGUCAUCCCCCGCCU_UGCUUUCCCAGCUGGACUGCAGCAUAUCUC_AUUCUAAUU ..............((((((((.............))).)))))........................((((.....))))................. ( -5.56 = -6.52 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:00 2006