Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,975,300 – 10,975,392 |
Length | 92 |
Max. P | 0.789395 |
Location | 10,975,300 – 10,975,392 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 82.18 |
Mean single sequence MFE | -26.05 |
Consensus MFE | -16.58 |
Energy contribution | -16.88 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.11 |
Mean z-score | -2.49 |
Structure conservation index | 0.64 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789395 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10975300 92 + 27905053 ----UGCCUGCGAG---CUGAACUUAACCGACUUAAGGUUAAGGGACGUCCAA--AUGAAAUGUGACUAAUUUAUGUCAUGACCCACCCAUCCACCAACCC ----.((......)---)....(((((((.......)))))))((((((....--)))....(((((........)))))..........)))........ ( -16.00) >DroPse_CAF1 52289 93 + 1 ----CGGGUGGAAGACACUCAACUUAACCGACUUAAGGUUAAGGGACGUCCAA--GUCAAAUGUGACUAAUUUAUGUCACGGC--CCCCAAACACUAACCC ----.(((.((..(((......(((((((.......)))))))((....))..--)))...((((((........)))))).)--))))............ ( -29.50) >DroEre_CAF1 42972 89 + 1 ----UUGGUGGGAG---CCCAACUUAACCGACUUAAGGUUAAGGGACGUCCAA--CUGAAAUGUGGCUAAUUUAUGUCAUGAC--ACCCG-CCACCAACAA ----.(((((((((---((((.(((((((.......)))))))((....))..--......)).))))......(((....))--)))))-)))....... ( -30.60) >DroYak_CAF1 50653 91 + 1 ----UGAGUUGGAG---CCCAACUUAACCGACUUAAGGUUAAGGGACGUCCAACACUGAAAUGUGACUAAUUUAUGUCAUGAC--ACCCG-CCACCAAGCC ----...(((((((---(((...((((((.......))))))))).).))))))........(((((........)))))...--....(-(......)). ( -23.50) >DroAna_CAF1 65451 93 + 1 GUGUUGGGAGGAAA---UUUAACUUAACCGACUUAAGGUUAAGGGACGUCCAA--GUCAAAUGUGACUAAUUUAUGUCAUGGC--ACCCU-AUACUAACCC ((((.(((.(((..---.....(((((((.......))))))).....)))..--((((....((((........))))))))--.))).-))))...... ( -27.20) >DroPer_CAF1 49459 93 + 1 ----CGGGUGGAAGACACUCAACUUAACCGACUUAAGGUUAAGGGACGUCCAA--GUCAAAUGUGACUAAUUUAUGUCACGGC--CCCCAAACACUAACCC ----.(((.((..(((......(((((((.......)))))))((....))..--)))...((((((........)))))).)--))))............ ( -29.50) >consensus ____UGGGUGGAAG___CUCAACUUAACCGACUUAAGGUUAAGGGACGUCCAA__GUCAAAUGUGACUAAUUUAUGUCAUGAC__ACCCA_ACACCAACCC .....(((..............(((((((.......)))))))((....))..........((((((........)))))).....)))............ (-16.58 = -16.88 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:59 2006