Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,493,684 – 1,493,785 |
Length | 101 |
Max. P | 0.510917 |
Location | 1,493,684 – 1,493,785 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 82.16 |
Mean single sequence MFE | -27.18 |
Consensus MFE | -18.02 |
Energy contribution | -17.08 |
Covariance contribution | -0.94 |
Combinations/Pair | 1.33 |
Mean z-score | -1.50 |
Structure conservation index | 0.66 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.510917 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1493684 101 - 27905053 GGACAUUAACGGCAUGCGGACGUUUAGCUUCGAGCAGGAUGUUCUAUUCGAAGGGUAAGUUUCGAAUAA---GAUACGAAUACUAAGUUCGUGUAGCUAACACU ..........(((....(((((((..((.....))..)))))))(((((((((......))))))))).---.((((((((.....)))))))).)))...... ( -27.30) >DroSec_CAF1 2361 101 - 1 GGACAUUAACGGCAUGCGGACGUUUAGCUUCGAGCAGGAUGUUCUAUUCGAAGGGUAAGUUUCGAAUAA---GAUACGAAUAUUUGGUUCGUGUAGCUAACACU ..........(((....(((((((..((.....))..)))))))(((((((((......))))))))).---.((((((((.....)))))))).)))...... ( -27.40) >DroSim_CAF1 2367 101 - 1 GGACAUUAACGGCAUGCGGACGUUUAGCUUCGAGCAGGAUGUUCUAUUCGAAGGGUAAGUUUCGAAUAA---GAUACGAAUAUUUGGUUCGUGUAGCUAACACU ..........(((....(((((((..((.....))..)))))))(((((((((......))))))))).---.((((((((.....)))))))).)))...... ( -27.40) >DroEre_CAF1 2471 101 - 1 GGACAUUAACGGCAUGCGGACGUUUAGCUUCGAGCAGGAUGUUCUAUUCGAAGCGUAAGUUUUGAAUAA---CUUAAAAACAUUUAGUUCGUGUAGUCAACGGU ..........(((((((((((.....((((((((.(((....))).)))))))).((((((......))---))))..........)))))))).)))...... ( -28.60) >DroYak_CAF1 2423 101 - 1 GGACAUUAACGGCAUGCGGACGUUUAGCUUCGAGCAGGAUGUUCUAUUUGAAGCGUAAGUUUCAAAUAA---CUUAAAACCAUUUUGCUCGUGAAGUCAACACU .(((....((((((...(((((((..((.....))..)))))))((((((((((....)))))))))).---.............))).)))...)))...... ( -30.90) >DroAna_CAF1 2301 100 - 1 AGAAAUCAGCGGAAUGCGUACGUUUAGUUUCGAACAGGAUGUGCUCUUCGAGGCGUAAGUUGUCAACACUCUGUUUUGAAUACUUUGUAUUUCAAGUUA----U ..........((((((((((((((..((.....))..)))))))..(((((((((..(((.(....)))).)))))))))......)))))))......----. ( -21.50) >consensus GGACAUUAACGGCAUGCGGACGUUUAGCUUCGAGCAGGAUGUUCUAUUCGAAGCGUAAGUUUCGAAUAA___GAUACGAAUAUUUAGUUCGUGUAGCUAACACU ..........(((....(((((((..((.....))..)))))))(((((((((......)))))))))...........................)))...... (-18.02 = -17.08 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:18 2006