Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,972,697 – 10,972,788 |
Length | 91 |
Max. P | 0.878564 |
Location | 10,972,697 – 10,972,788 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 87.46 |
Mean single sequence MFE | -16.15 |
Consensus MFE | -12.10 |
Energy contribution | -12.17 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -2.15 |
Structure conservation index | 0.75 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878564 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10972697 91 - 27905053 UGGUACAACAAA-AAAACACGAACA-AACAAUAACAAAAUGGGGCGCAAGAA-----UAAUACCAAUAAUGGUGAACAAUUUUUAGUGCUCUCGCUCU ............-............-..............((((((((((((-----(..(((((....)))))....)))))).)))))))...... ( -14.80) >DroSec_CAF1 38460 90 - 1 GCGUACAACAAA--AAACAUGAACA-AACAAUAACAAAAUGGGGCGCAAGAA-----UAAUACCAAUAAUGGUGAACAAUUUUUAGUGCUCUCGCUCU (((.........--...(((.....-............)))(((((((((((-----(..(((((....)))))....)))))).)))))).)))... ( -16.53) >DroSim_CAF1 47482 90 - 1 GCGUACAACAAC--AAACAUGAACA-AACAAUAACAAAAUGGGGCGCAAGAA-----UAACACCAAUAAUGGUGAACAAUUUUUAGUGCUCACGCUCU ((((........--...(((.....-............)))(((((((((((-----(..(((((....)))))....)))))).))))))))))... ( -20.83) >DroYak_CAF1 48205 98 - 1 UUCUAAAACAACAAAAAUAUGAACAAAACAAUAACAAAAAGGGGCGCAAGAAGCAAACUAUACCAAUAAUGGUGAACAAUUUUUAAUGCUCUCCCUCU .......................................(((((.(((..(((.......(((((....))))).......)))..))).).)))).. ( -12.44) >consensus GCGUACAACAAA__AAACAUGAACA_AACAAUAACAAAAUGGGGCGCAAGAA_____UAAUACCAAUAAUGGUGAACAAUUUUUAGUGCUCUCGCUCU .........................................((((((.((((........(((((....)))))......)))).))))))....... (-12.10 = -12.17 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:58 2006