Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,955,601 – 10,955,694 |
Length | 93 |
Max. P | 0.943532 |
Location | 10,955,601 – 10,955,694 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 70.95 |
Mean single sequence MFE | -20.98 |
Consensus MFE | -10.13 |
Energy contribution | -11.52 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.06 |
Mean z-score | -2.01 |
Structure conservation index | 0.48 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10955601 93 - 27905053 AACACUCA-CCACCCAUAGUUGGUUGAUGCCCC-CUUUUUAC------------AUGAAACCAAAUUAAUACUUUGAUUUGGGACCAAGCGGAAAAUAUAUUUGAUU .....(((-.((.(((....))).)).......-.((((..(------------.((...(((((((((....)))))))))...)).)..)))).......))).. ( -15.10) >DroSec_CAF1 24979 93 - 1 AACACCCA-CCACCCAUAUUUGGGUGGUGCCCC-CUUUUUAC------------AUGGAGCCAAAUAAAUACUUUGAUUUAGGACCAAGCGGGAAAUAUAUUUGAUU ......((-(((((((....))))))))).(((-((......------------.(((..((((((.((....)).)))).)).))))).))).............. ( -23.81) >DroSim_CAF1 33663 76 - 1 AACACCCA-CCAC-----------------CC-CCUUUUUAC------------AUGGAGCCAAAUUAAUACUUUGAUUUGGGACCAAGCGGAAAAUAUAUUUGAUU ........-....-----------------..-..((((..(------------.(((..(((((((((....)))))))))..))).)..))))............ ( -14.60) >DroEre_CAF1 25599 98 - 1 UUCCCCCACCCACCCACAGUUGGGUGGCGCCC--CUUUUCACCAAAU-----GAAUGGAACCAAAUUAACACUUUGAUUUCGGCCAGGGCGGAAAAUAUAC--GACA (((((((..(((((((....))))))).((((--(..((((.....)-----))).))....(((((((....))))))).)))..))).)))).......--.... ( -29.40) >DroYak_CAF1 33371 103 - 1 UUCCCCCAUCCACCCACAGUUGGGUGGCGCCC--UUUUCCACCAAAUGAAAUGAAUGGAACCAAAUUAACACUUUGAUUUCGGCCAGAACGGAAAAUAUAC--CACA ((((.....(((((((....))))))).(((.--..(((((.((.......))..)))))..(((((((....))))))).)))......)))).......--.... ( -22.00) >consensus AACACCCA_CCACCCACAGUUGGGUGGCGCCC__CUUUUUAC____________AUGGAACCAAAUUAAUACUUUGAUUUCGGACCAAGCGGAAAAUAUAUUUGAUU .....((..(((((((....))))))).................................(((((((((....))))))).)).......))............... (-10.13 = -11.52 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:57 2006