Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,952,252 – 10,952,349 |
Length | 97 |
Max. P | 0.634810 |
Location | 10,952,252 – 10,952,349 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 86.35 |
Mean single sequence MFE | -26.01 |
Consensus MFE | -18.47 |
Energy contribution | -18.51 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.80 |
Structure conservation index | 0.71 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10952252 97 - 27905053 GUUAAGGGCAUCAGUCAGGCAUCGCAUUCAGAUUAUGCCUCAUCUGUGGAAACUAGUUUUCCUUAAUUACCCACUCUAGGCCACUGAUUAUA----------UGCCC .....((((((.((((((((((..(.....)...)))))......((((...((((...................)))).)))))))))..)----------))))) ( -25.41) >DroSec_CAF1 21463 97 - 1 GUUAAGGGCAUCAGUCAGGCAUCGCAUUCAGAUUAUGCCUCAUCUGUGGAAACUAGUUUUCCUUAAUUACCCACUCUAGGCCACUGAUUAUG----------UGUCC .....((((((.((((((((((..(.....)...)))))......((((...((((...................)))).)))))))))..)----------))))) ( -23.01) >DroSim_CAF1 29206 97 - 1 GUUAAGGGCAUCAGUCAGGCAUCGCAUUCAGAUUAUGCCUCAUCUGUGGAAACUAGUUUUCCUUAAUUACCCACUCUAGGCCACUGAUUAUG----------UGUCC .....((((((.((((((((((..(.....)...)))))......((((...((((...................)))).)))))))))..)----------))))) ( -23.01) >DroEre_CAF1 22157 107 - 1 GCUAAGGGCAUCAGUCAGGCAUCAGAUUCAGAUUAUGCCUCAUAUGUGGAAACUAGAUUUCUUUAAUUACCCGCUCUAGGCCACUGAUUAUAUGUCUGAUUAUGUCC .....((((((.((((((((((.....((((.....((((.....((((.....((....))........))))...))))..))))....)))))))))))))))) ( -30.32) >DroYak_CAF1 29974 100 - 1 GUUAAGGGCAUCAGUCAGGCAUCGCAUUCGGAUUAUGCCUCAGCUGUGGAAACUAGUUUUCUUUGAUUACCCACUCAAGGCCACU-------UGUCUGAUUAUGUCC .....((((((.(((((((((..((((.......))))...(((((.(....))))))..((((((........)))))).....-------))))))))))))))) ( -28.30) >consensus GUUAAGGGCAUCAGUCAGGCAUCGCAUUCAGAUUAUGCCUCAUCUGUGGAAACUAGUUUUCCUUAAUUACCCACUCUAGGCCACUGAUUAUA__________UGUCC .....(((((......((((((............)))))).....((((...((((...................)))).))))..................))))) (-18.47 = -18.51 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:56 2006