Locus 4016

Sequence ID 3R_DroMel_CAF1
Location 10,949,432 – 10,949,523
Length 91
Max. P 0.562137
window6434

overview

Window 4

Location 10,949,432 – 10,949,523
Length 91
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 88.92
Mean single sequence MFE -14.67
Consensus MFE -11.01
Energy contribution -11.21
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.75
SVM decision value 0.06
SVM RNA-class probability 0.562137
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10949432 91 - 27905053
ACAAAUGUUGAUAAGGACCGAACUGUGACCGACCCCCAACUCUCUGAAUU---UCUCAUCCUCCGCCCACAAAAAUCAACAAGCAUUUUCC--A-AA
.....(((((((..((..((.........))..)).........(((...---..)))................)))))))..........--.-.. (  -7.80)
>DroSec_CAF1 18624 91 - 1
ACAAAUGUUGAUAAGGGCCGAACUGUGACCGCGCCCCAACUCUCGGAUUC---UCUCAUCCUCCGCCCACAUAAAUCAACAAGCAUUUCCC--A-AA
.....(((((((..((((((.........)).))))........((((..---....)))).............)))))))..........--.-.. ( -18.30)
>DroSim_CAF1 26355 91 - 1
ACAAAUGUUGAUAAGGGCCGAACUGUGACCGCGCCCCAACUCUCGGAUUC---UCUCAUCCUCCGCCCACAAAAAUCAACAAGCAUUUCCC--A-AA
.....(((((((..((((((.........)).))))........((((..---....)))).............)))))))..........--.-.. ( -18.30)
>DroEre_CAF1 19302 95 - 1
GCAAAUGUUGAUAAGGGCCGAACUGUGACCGC-CCCCGACUCUCAGAUCCUCCUCCCAUUUUCCGCCCCAAAAAAUCAACAAGCAUUUCCCCCA-AA
((...(((((((..((((.((((((.((.((.-...))..)).)))..............))).))))......))))))).))..........-.. ( -16.03)
>DroYak_CAF1 27059 93 - 1
ACAAAUGUUGAUAAGGGCCGAACUGUGACCGC-CCCCAACUCUCAGAUUC---UCCCAUCCUCCGCCCCCAAAAAUCAACAAGCAUUUCCCCCAAAA
.....(((((((..((((.((((((.((....-.......)).))).)))---...........))))......)))))))................ ( -12.90)
>consensus
ACAAAUGUUGAUAAGGGCCGAACUGUGACCGC_CCCCAACUCUCAGAUUC___UCUCAUCCUCCGCCCACAAAAAUCAACAAGCAUUUCCC__A_AA
.....(((((((..((((.((...(((.............................)))..)).))))......)))))))................ (-11.01 = -11.21 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:55 2006