Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,945,544 – 10,945,643 |
Length | 99 |
Max. P | 0.621398 |
Location | 10,945,544 – 10,945,643 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 68.72 |
Mean single sequence MFE | -18.68 |
Consensus MFE | -6.46 |
Energy contribution | -7.74 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.10 |
Mean z-score | -1.80 |
Structure conservation index | 0.35 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10945544 99 - 27905053 --AAA-UAAA---UAAUAUAGAUAGCAAUAUA-GCCAU-U-CGCAUAAAUU------AU-AUAUGUAGUUCACUUAAGACCAGUGAACACUUUAGCCAUUGAAGAGGCAGUUAAA --...-....---((((....(((....))).-(((.(-(-((((((....------..-.))))).(((((((.......)))))))............)))..))).)))).. ( -17.20) >DroSec_CAF1 14735 93 - 1 --AAA-UAAA---UAAUAUA-------AUAUU-GCUAU-UACGCAUAAAUU------AU-AUAUGUAGUUCACUUUAGACCAGUGAACACUUUAGCCAUAGAAGCGGCAGUUAAA --...-....---..(((((-------((..(-((...-...)))...)))------))-)).....(((((((.......)))))))......(((........)))....... ( -18.30) >DroSim_CAF1 22524 93 - 1 --AAA-UAAA---UAAUAUA-------AUAUU-GCUAU-UUCGCAUAAAUU------AU-AUAUGUAGUUCACUUCAGACCAGUGAACACUUUAGCCAUAGAAGAGGCAGUUAAA --...-....---.......-------..(((-(((.(-((((((((....------..-.))))).(((((((.......)))))))............)))).)))))).... ( -18.80) >DroEre_CAF1 15473 98 - 1 UUAAA-UAAA---UAAUUCUAAUUGCAAUGUAUG-CAA-UGCGCAUAAAUU------AU-AU----AGUUCACUUUAGACCAGUGAUCACUUUAGCCAUCGACGAGGCAGUUAAA .....-....---......((((((((((.((((-(..-...))))).)))------..-..----.(.(((((.......))))).)..................))))))).. ( -15.70) >DroAna_CAF1 15036 105 - 1 --GAAAUAUUUGGCAUUAAA-------GUAUU-GCUCUUUUCGUAAGAAUUUGAGUCAUAAUCCGUGAUCCUUUUUAGCCAAUUUCUCCUUUUCGGGAUCAACCAGUCAGCCAAA --......((((((......-------.(((.-((((..(((....)))...)))).))).....(((((((....((..........))....)))))))........)))))) ( -23.40) >consensus __AAA_UAAA___UAAUAUA_______AUAUU_GCUAU_UUCGCAUAAAUU______AU_AUAUGUAGUUCACUUUAGACCAGUGAACACUUUAGCCAUAGAAGAGGCAGUUAAA ...................................................................(((((((.......)))))))......(((........)))....... ( -6.46 = -7.74 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:54 2006