Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,938,935 – 10,939,028 |
Length | 93 |
Max. P | 0.797429 |
Location | 10,938,935 – 10,939,028 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 85.14 |
Mean single sequence MFE | -20.11 |
Consensus MFE | -13.29 |
Energy contribution | -13.37 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.06 |
Mean z-score | -2.28 |
Structure conservation index | 0.66 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10938935 93 - 27905053 UCUGGCAGACGUAUCUAUGUUUUAUCCCUGCACUGCCACAACUGCCACAACUUCCUCAACUUCC---------ACACUCCCGCC--------------UUCCGGUGCGGAAUAAAU ..((((((..((..(..(((.........)))..)..))..)))))).................---------....(((((((--------------....)))).)))...... ( -19.50) >DroSec_CAF1 8017 84 - 1 UUUGGCAGACGUAUCUAUGUUUUAUCCCUGCACUGCC---------ACAACUUCCUCAACUUCC---------ACACUCCCGCC--------------UUCCGGUGCGGAAUAAAU ..((((((..(((...............))).)))))---------).................---------....(((((((--------------....)))).)))...... ( -16.46) >DroSim_CAF1 15792 93 - 1 UUUGGCAGACGUAUCUAUGUUUUAUCCCUGCACUGCCACAACUGCCACAACUUCCUCAACUUCC---------ACACUCCCGCC--------------UUCCGGUGCGGAAUAAAU ..((((((..((..(..(((.........)))..)..))..)))))).................---------....(((((((--------------....)))).)))...... ( -19.60) >DroEre_CAF1 8666 109 - 1 UUUGGCAGACGUAUCUAUGUUUUAUCCCUGCACUGCCACAACUGCCACAACUUCCUCAACUUCCUCAACUGCCACACUCCCGCCUGC-------CGCCUUCCGGUGCGGAAUAAAU ..((((((..((..(..(((.........)))..)..))..))))))................................((((..((-------((.....))))))))....... ( -21.50) >DroYak_CAF1 16230 107 - 1 UUUGGCAGACGUAUCUAUGUUUUAUCCCUGCACUGCCGCAACUGCCACAACUUUCUCAACUUCC---------ACACUCCCGCCUUCCGCCUUCCGCUUUCCGGUGCGGAAUAAAU ..((((((((((....))))........(((......))).)))))).................---------...........((((((...(((.....))).))))))..... ( -23.50) >consensus UUUGGCAGACGUAUCUAUGUUUUAUCCCUGCACUGCCACAACUGCCACAACUUCCUCAACUUCC_________ACACUCCCGCC______________UUCCGGUGCGGAAUAAAU ..((((((..(((...............))).)))))).......................................(((((((..................)))).)))...... (-13.29 = -13.37 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:53 2006