Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,938,417 – 10,938,514 |
Length | 97 |
Max. P | 0.581631 |
Location | 10,938,417 – 10,938,514 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 69.24 |
Mean single sequence MFE | -17.36 |
Consensus MFE | -3.71 |
Energy contribution | -2.38 |
Covariance contribution | -1.33 |
Combinations/Pair | 1.36 |
Mean z-score | -2.21 |
Structure conservation index | 0.21 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581631 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10938417 97 - 27905053 CCAUUUCCUUAUCGCUGUCAUACUUCACCCAA-----------GAGCUGCAUUUCG-CAAACGAUGCCAACUAUUUGAUCCCAUUUC---GAAACCAGUUCCUCCUCAGCCA--- .............((((...............-----------((((((..(((((-((.....))).........((.......))---)))).)))))).....))))..--- ( -12.05) >DroPse_CAF1 8770 100 - 1 ----------ACCGCACUAAUAUUCCAACAAAUAUUUGCAUCUGUGCCGCAUCUCUCCGAACAAUCCAAAAAAUUUGAUCUAGUUUUUGAGAAACUGGUGCCGCAU--ACCA--- ----------...(((..((((((......)))))))))...(((((.(((((((((.((((....(((.....))).....))))..))))....))))).))))--)...--- ( -18.80) >DroSec_CAF1 7499 97 - 1 CCAUUUCCUUAUCGCUGUGAUCCUUCACCCAA-----------GAGCUGCAUUUCG-CAAACCAUGCCAACUAUUUGAUCCCAUUUC---GAAACCAGUUCCUCCUCAGCCA--- .............(((((((....))))....-----------((((((..(((((-((.....))).........((.......))---)))).))))))......)))..--- ( -15.40) >DroSim_CAF1 15264 97 - 1 CCAUUUCCUUAUCGCUGUGAUCCUUCACCCAA-----------GAGCUGCAUUUCG-CAAACCAUGCCAACUAUUUGAUCCCAUUUC---GAAACCAGUUCCUCCUCAGCCA--- .............(((((((....))))....-----------((((((..(((((-((.....))).........((.......))---)))).))))))......)))..--- ( -15.40) >DroYak_CAF1 15686 100 - 1 CCAUUUCCUUAUCGCUGUGAUCCUUCACCCAA-----------GAGCUCCAGUUGG-CAAACCAUGCCAACUAUUUGAUCCCAUUUC---GAAACCAGUUCCUCCGCAGCCAACA .............(((((((....))......-----------(((((..((((((-((.....)))))))).(((((.......))---)))...)))))....)))))..... ( -23.70) >DroPer_CAF1 7207 100 - 1 ----------ACCGCACUAAUAUUCCAACAAAUAUUUGCAUCUGUGCCGCAUCUCUCCGAACAAUCCAAAAAAUUUGAUCUAGUUUUUGAGAAACUGGUGCCGCAU--ACCA--- ----------...(((..((((((......)))))))))...(((((.(((((((((.((((....(((.....))).....))))..))))....))))).))))--)...--- ( -18.80) >consensus CCAUUUCCUUAUCGCUGUGAUACUUCACCCAA___________GAGCUGCAUUUCG_CAAACCAUGCCAACUAUUUGAUCCCAUUUC___GAAACCAGUUCCUCCUCAGCCA___ ...........................................((((((........((((............))))......((((...)))).)))))).............. ( -3.71 = -2.38 + -1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:52 2006